Hierarchy For Package net.sf.basedb.core

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • net.sf.basedb.core.AbstractBatcher (implements net.sf.basedb.core.Batcher)
    • net.sf.basedb.core.AnnotationBatcher
    • net.sf.basedb.core.BasicBatcher<D> (implements net.sf.basedb.core.AccessControlled)
      • net.sf.basedb.core.FeatureBatcher
      • net.sf.basedb.core.RawDataBatcher
      • net.sf.basedb.core.ReporterBatcher
    • net.sf.basedb.core.FilterBatcher
    • net.sf.basedb.core.MappingBatcher
    • net.sf.basedb.core.PositionBatcher
    • net.sf.basedb.core.PositionExtraValueBatcher<I>
    • net.sf.basedb.core.ReporterCloneBatcher
    • net.sf.basedb.core.SpotBatcher
    • net.sf.basedb.core.SpotExtraValueBatcher<I>
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • net.sf.basedb.core.UnmodifiableResultList<T> (implements net.sf.basedb.core.query.ResultList<I>)
  • net.sf.basedb.core.AbstractQuery (implements net.sf.basedb.core.query.Query)
    • net.sf.basedb.core.AbstractHqlQuery (implements net.sf.basedb.core.query.HqlQuery)
      • net.sf.basedb.core.AbstractEntityQuery (implements net.sf.basedb.core.query.EntityQuery)
        • net.sf.basedb.core.DataQuery<I>
        • net.sf.basedb.core.ItemQuery<I>
        • net.sf.basedb.core.ReporterScoreQuery
      • net.sf.basedb.core.SpecialQuery<C>
    • net.sf.basedb.core.AbstractSqlQuery (implements net.sf.basedb.core.query.SqlQuery)
      • net.sf.basedb.core.DynamicQuery (implements net.sf.basedb.core.ClonableReporterQuery)
        • net.sf.basedb.core.DataCube.RawMappingQuery
        • net.sf.basedb.core.DynamicExtraValueQuery
        • net.sf.basedb.core.DynamicPositionQuery
        • net.sf.basedb.core.DynamicSpotQuery
      • net.sf.basedb.core.DynamicRawDataQuery
      • net.sf.basedb.core.DynamicReporterQuery (implements net.sf.basedb.core.ClonableReporterQuery)
  • net.sf.basedb.core.AbstractResultList<I> (implements net.sf.basedb.core.query.ResultList<I>)
    • net.sf.basedb.core.ItemResultList<I>
  • net.sf.basedb.core.Annotation.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.AnnotationBatcher.CurrentAnnotationInfo (implements net.sf.basedb.core.data.LoggableData)
  • net.sf.basedb.core.AnnotationBatcher.InsertBatcher
  • net.sf.basedb.core.AnnotationBatcher.UpdateBatcher
  • net.sf.basedb.core.AnnotationRestriction (implements net.sf.basedb.core.query.Restriction)
    • net.sf.basedb.core.AnnotationBetweenRestriction
    • net.sf.basedb.core.AnnotationInRestriction
    • net.sf.basedb.core.AnnotationSimpleRestriction
    • net.sf.basedb.core.HasAnnotationRestriction
  • net.sf.basedb.core.AnnotationRestriction.Options
  • net.sf.basedb.core.AnnotationSet.ProjectSpecificAnnotationsRestriction (implements net.sf.basedb.core.query.Restriction)
  • net.sf.basedb.core.AnnotationSet.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.AnnotationType.RemoveInheritedAnnotationsAction (implements net.sf.basedb.core.TransactionalAction)
  • net.sf.basedb.core.AnyToAny.FastLinkLoader<S,T>
  • net.sf.basedb.core.Application
  • net.sf.basedb.core.Application.Pinger
  • net.sf.basedb.core.Application.StartupOptions
  • net.sf.basedb.core.data.BasicData (implements net.sf.basedb.core.data.IdentifiableData)
    • net.sf.basedb.core.data.FeatureData (implements net.sf.basedb.core.data.BatchableData, net.sf.basedb.core.data.NoAutoUnlinkAnyToAny)
      • net.sf.basedb.core.RawDataBatcher.FeatureProxy
    • net.sf.basedb.core.data.ReporterData (implements net.sf.basedb.core.data.BatchableData, net.sf.basedb.core.data.ExtendableData, net.sf.basedb.core.data.NameableData, net.sf.basedb.core.data.NoAutoUnlinkAnyToAny, net.sf.basedb.core.data.RegisteredData)
      • net.sf.basedb.core.RawDataBatcher.ReporterProxy
  • net.sf.basedb.core.BasicItem (implements net.sf.basedb.core.Identifiable)
    • net.sf.basedb.core.Annotation
    • net.sf.basedb.core.AnnotationSet (implements net.sf.basedb.core.Transactional)
    • net.sf.basedb.core.AnyToAny (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Transactional)
    • net.sf.basedb.core.BasicChildItem
      • net.sf.basedb.core.ItemSubtypeFileType (implements net.sf.basedb.core.UsableDataFileType)
      • net.sf.basedb.core.PlatformFileType (implements net.sf.basedb.core.UsableDataFileType)
      • net.sf.basedb.core.PlatformVariant (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.BioPlateEventType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.BioPlateType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.ChangeHistory
    • net.sf.basedb.core.ChildItem
      • net.sf.basedb.core.ArrayDesignBlock
      • net.sf.basedb.core.ArrayDesignPlate
      • net.sf.basedb.core.BioAssay (implements net.sf.basedb.core.Annotatable, net.sf.basedb.core.Nameable)
      • net.sf.basedb.core.BioAssaySet (implements net.sf.basedb.core.Annotatable, net.sf.basedb.core.FileStoreEnabled, net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
      • net.sf.basedb.core.BioMaterialEvent (implements net.sf.basedb.core.Registered)
      • net.sf.basedb.core.BioPlateEventParticipant
      • net.sf.basedb.core.BioWell
      • net.sf.basedb.core.DataCube
      • net.sf.basedb.core.DataCubeColumn
      • net.sf.basedb.core.DataCubeExtraValue
      • net.sf.basedb.core.DataCubeFilter
      • net.sf.basedb.core.DataCubeLayer
      • net.sf.basedb.core.ExtraValue (implements net.sf.basedb.core.FileStoreEnabled)
      • net.sf.basedb.core.Help (implements net.sf.basedb.core.Nameable)
      • net.sf.basedb.core.JobAgentSettings
      • net.sf.basedb.core.PlateEvent (implements net.sf.basedb.core.Registered)
      • net.sf.basedb.core.PlateEventType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
      • net.sf.basedb.core.RootRawBioAssay (implements net.sf.basedb.core.Annotatable, net.sf.basedb.core.Nameable)
      • net.sf.basedb.core.SyncFilter (implements net.sf.basedb.core.Nameable)
      • net.sf.basedb.core.Transformation (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
      • net.sf.basedb.core.VirtualDb
      • net.sf.basedb.core.Well (implements net.sf.basedb.core.Annotatable)
    • net.sf.basedb.core.DataFileType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable, net.sf.basedb.core.Validatable)
    • net.sf.basedb.core.DiskUsage
    • net.sf.basedb.core.ExtraValueType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.FileSet
    • net.sf.basedb.core.FileSetMember
    • net.sf.basedb.core.Group (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.ItemSubtype (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable, net.sf.basedb.core.Subtypable, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.Key
      • net.sf.basedb.core.ItemKey
      • net.sf.basedb.core.ProjectKey
      • net.sf.basedb.core.RoleKey (implements net.sf.basedb.core.Nameable)
    • net.sf.basedb.core.Message (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.MimeType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.News (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable, net.sf.basedb.core.Validatable)
    • net.sf.basedb.core.OwnedItem (implements net.sf.basedb.core.Ownable)
      • net.sf.basedb.core.Project (implements net.sf.basedb.core.Annotatable, net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable)
      • net.sf.basedb.core.SharedItem (implements net.sf.basedb.core.Shareable)
        • net.sf.basedb.core.CommonItem (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
          • net.sf.basedb.core.AnnotatedItem (implements net.sf.basedb.core.Annotatable)
            • net.sf.basedb.core.ArrayBatch (implements net.sf.basedb.core.Registered)
            • net.sf.basedb.core.ArrayDesign (implements net.sf.basedb.core.FileStoreEnabled, net.sf.basedb.core.Registered)
            • net.sf.basedb.core.ArraySlide (implements net.sf.basedb.core.Registered)
            • net.sf.basedb.core.BioMaterial (implements net.sf.basedb.core.Listable, net.sf.basedb.core.Subtypable)
              • net.sf.basedb.core.BioSource (implements net.sf.basedb.core.Registered)
              • net.sf.basedb.core.MeasuredBioMaterial (implements net.sf.basedb.core.Registered)
                • net.sf.basedb.core.Extract
                • net.sf.basedb.core.Sample
            • net.sf.basedb.core.BioPlate (implements net.sf.basedb.core.Registered)
            • net.sf.basedb.core.DerivedBioAssay (implements net.sf.basedb.core.FileStoreEnabled, net.sf.basedb.core.Listable, net.sf.basedb.core.Registered, net.sf.basedb.core.Subtypable)
            • net.sf.basedb.core.Experiment (implements net.sf.basedb.core.DiskConsumable, net.sf.basedb.core.Registered, net.sf.basedb.core.Transactional)
            • net.sf.basedb.core.File (implements net.sf.basedb.core.DiskConsumable, net.sf.basedb.core.Subtypable, net.sf.basedb.core.Transactional)
            • net.sf.basedb.core.FileServer
            • net.sf.basedb.core.Hardware (implements net.sf.basedb.core.Registered, net.sf.basedb.core.Subtypable)
            • net.sf.basedb.core.ItemList
            • net.sf.basedb.core.Kit (implements net.sf.basedb.core.Registered, net.sf.basedb.core.Subtypable)
            • net.sf.basedb.core.PhysicalBioAssay (implements net.sf.basedb.core.Listable, net.sf.basedb.core.Registered, net.sf.basedb.core.Subtypable)
            • net.sf.basedb.core.Plate (implements net.sf.basedb.core.Registered)
            • net.sf.basedb.core.PluginConfiguration (implements net.sf.basedb.core.AnnotatableProxy, net.sf.basedb.core.Registered, net.sf.basedb.core.Transactional)
            • net.sf.basedb.core.Protocol (implements net.sf.basedb.core.FileAttachable, net.sf.basedb.core.Registered, net.sf.basedb.core.Subtypable)
            • net.sf.basedb.core.RawBioAssay (implements net.sf.basedb.core.DiskConsumable, net.sf.basedb.core.FileStoreEnabled, net.sf.basedb.core.Listable, net.sf.basedb.core.Registered)
            • net.sf.basedb.core.Software (implements net.sf.basedb.core.Registered, net.sf.basedb.core.Subtypable)
            • net.sf.basedb.core.Tag (implements net.sf.basedb.core.Registered, net.sf.basedb.core.Subtypable)
          • net.sf.basedb.core.AnnotationType (implements net.sf.basedb.core.Registered)
          • net.sf.basedb.core.AnnotationTypeCategory (implements net.sf.basedb.core.Registered)
          • net.sf.basedb.core.BioPlateEvent (implements net.sf.basedb.core.Registered, net.sf.basedb.core.Transactional)
          • net.sf.basedb.core.Client (implements net.sf.basedb.core.Registered)
          • net.sf.basedb.core.Formula (implements net.sf.basedb.core.Registered, net.sf.basedb.core.Validatable)
          • net.sf.basedb.core.Job (implements net.sf.basedb.core.Subtypable, net.sf.basedb.core.Transactional)
          • net.sf.basedb.core.JobAgent
          • net.sf.basedb.core.PermissionTemplate
          • net.sf.basedb.core.PlateMapping (implements net.sf.basedb.core.Registered)
          • net.sf.basedb.core.PlateType (implements net.sf.basedb.core.Registered)
          • net.sf.basedb.core.PluginDefinition (implements net.sf.basedb.core.AnnotatableProxy, net.sf.basedb.core.Registered)
          • net.sf.basedb.core.ReporterCloneTemplate (implements net.sf.basedb.core.Registered)
          • net.sf.basedb.core.ReporterList (implements net.sf.basedb.core.Registered)
        • net.sf.basedb.core.Directory (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.PlateGeometry (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.Platform (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.PluginType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.Quantity (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.Quota (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.QuotaType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.ReporterType (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.Role (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.Session
    • net.sf.basedb.core.Setting
      • net.sf.basedb.core.ClientDefaultSetting
      • net.sf.basedb.core.GlobalDefaultSetting
      • net.sf.basedb.core.UserClientSetting
      • net.sf.basedb.core.UserDefaultSetting
    • net.sf.basedb.core.Unit (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Removable)
    • net.sf.basedb.core.User (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered, net.sf.basedb.core.Removable, net.sf.basedb.core.SystemItem)
    • net.sf.basedb.core.UserDevice (implements net.sf.basedb.core.Nameable, net.sf.basedb.core.Registered)
  • net.sf.basedb.core.BatchedPropertyInfo
  • net.sf.basedb.core.BatchUtil
  • net.sf.basedb.core.BioMaterialEventSource (implements net.sf.basedb.core.AccessControlled)
  • net.sf.basedb.core.BioMaterialEventSource.BioMaterialEventSourceTransformer (implements net.sf.basedb.util.transform.Transformer<T,F>)
  • net.sf.basedb.core.BlockInfo
  • net.sf.basedb.core.ChangeHistory.TransactionInfo
  • net.sf.basedb.util.extensions.ClientContext
    • net.sf.basedb.core.AuthenticationContext
  • net.sf.basedb.core.Coloring (implements net.sf.basedb.core.AccessControlled)
  • net.sf.basedb.core.Config
  • net.sf.basedb.core.ContextKey
  • net.sf.basedb.core.DataResultIterator<I> (implements net.sf.basedb.core.query.ResultIterator<I>)
  • net.sf.basedb.core.DateUtil
  • net.sf.basedb.core.DbControl (implements java.lang.AutoCloseable)
  • net.sf.basedb.core.DbControl.SaveIf
  • net.sf.basedb.core.DbControl.State (implements java.lang.Runnable)
  • net.sf.basedb.core.DerivedBioAssay.FixDerivedBioAssayParentsRecursivelyAction (implements net.sf.basedb.core.TransactionalAction)
  • net.sf.basedb.core.DiskUsageStatistics
  • net.sf.basedb.core.DiskUsageStatistics.Summary
  • net.sf.basedb.core.DropDynamicTableAction (implements net.sf.basedb.core.TransactionalAction)
  • net.sf.basedb.core.DynamicJoin (implements net.sf.basedb.core.query.Join)
  • net.sf.basedb.core.DynamicPositionQueryJoiners
  • net.sf.basedb.core.DynamicPositionQueryJoiners.ExtraValueJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicPositionQueryJoiners.ReporterJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicPositionQueryJoiners.ReporterListJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicRawDataQuery.RawBioAssayJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicRawDataQuery.ReporterJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicRawDataQuery.ReporterListJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicReporterQuery.MasterReporterJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicReporterQuery.ReporterListJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicRestriction (implements net.sf.basedb.core.query.Restriction)
  • net.sf.basedb.core.DynamicResultIterator (implements net.sf.basedb.core.query.SqlResultIterator)
  • net.sf.basedb.core.DynamicResultIterator.SqlResultImpl (implements net.sf.basedb.core.query.SqlResult)
  • net.sf.basedb.core.DynamicSpotQueryJoiners
  • net.sf.basedb.core.DynamicSpotQueryJoiners.ExtraValueJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicSpotQueryJoiners.RawDataJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicSpotQueryJoiners.ReporterJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.DynamicSpotQueryJoiners.ReporterListJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.ExtendedProperties
  • net.sf.basedb.core.ExtendedProperty
    • net.sf.basedb.core.ClonableProperty (implements java.lang.Comparable<T>)
    • net.sf.basedb.core.RawDataProperty
  • net.sf.basedb.core.ExtendedPropertyAccessor (implements org.hibernate.property.access.spi.PropertyAccessStrategy)
  • net.sf.basedb.core.ExtendedPropertyAccessor.GetterSetter (implements org.hibernate.property.access.spi.Getter, org.hibernate.property.access.spi.PropertyAccess, org.hibernate.property.access.spi.Setter)
  • net.sf.basedb.core.ExtendedPropertyLinker
  • net.sf.basedb.core.ExtraValueExpression (implements net.sf.basedb.core.query.Expression)
  • net.sf.basedb.core.ExtraValueJoin (implements net.sf.basedb.core.query.Join)
  • net.sf.basedb.core.FastAnnotationLoader<T>
  • net.sf.basedb.core.FastAnnotationLoader.FastAnnotation<T>
  • net.sf.basedb.core.FastAnnotationLoader.FastIterator<T> (implements java.util.Iterator<E>)
  • net.sf.basedb.core.Feature
  • net.sf.basedb.core.FeatureCoordinate
  • net.sf.basedb.core.File.CharsetTesterThread (implements java.lang.Runnable)
  • net.sf.basedb.core.FileSet.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.FileSetMember.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.FileStoreUtil
  • net.sf.basedb.core.Group.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.GroupPermissions
  • net.sf.basedb.core.HibernateUtil
  • net.sf.basedb.core.HibernateUtil.DelayedFilterDef
  • net.sf.basedb.core.HibernateUtil.FilterConfigurator
  • net.sf.basedb.core.HqlQueryJoiners
  • net.sf.basedb.core.HqlQueryJoiners.AnnotationJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • net.sf.basedb.core.HqlQueryJoiners.ReporterListJoiner (implements net.sf.basedb.core.query.AutoJoiner<Q,E>)
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.FilterInputStream
      • net.sf.basedb.core.Migration.ProgressInputStream
  • net.sf.basedb.core.Install
  • net.sf.basedb.core.Install.ItemSubtypeFT
  • net.sf.basedb.core.Install.PlatformFT
  • net.sf.basedb.core.IntegerUtil
  • net.sf.basedb.core.IntensityFormula
  • net.sf.basedb.core.InternalJobQueue.JobRunner (implements java.lang.Runnable)
  • net.sf.basedb.core.Item.DefinedPermissions
  • net.sf.basedb.core.ItemContext
  • net.sf.basedb.core.ItemContext.PropertyFilterPair
  • net.sf.basedb.core.ItemContext.QueryRestrictions
  • net.sf.basedb.core.ItemContext.RowRestrictions
  • net.sf.basedb.core.ItemList.DelayedAdditionManager (implements net.sf.basedb.core.TransactionalAction)
  • net.sf.basedb.core.ItemProxy (implements java.lang.Comparable<T>)
  • net.sf.basedb.core.ItemResultIterator<I> (implements net.sf.basedb.core.query.ResultIterator<I>)
  • net.sf.basedb.core.ItemResultList.ResultListIterator<T> (implements java.util.Iterator<E>)
  • net.sf.basedb.core.ItemResultList.ResultListListIterator<T> (implements java.util.ListIterator<E>)
  • net.sf.basedb.core.Job.JobSignalTransporter (implements net.sf.basedb.core.signal.SignalTransporter)
  • net.sf.basedb.core.Job.ProgressReporterImpl (implements net.sf.basedb.core.ProgressReporter)
  • net.sf.basedb.core.Keyring
    • net.sf.basedb.core.InternalJobQueue.JobQueueKeyring
    • net.sf.basedb.core.Job.SignalKeyring
    • net.sf.basedb.core.ServiceSessionControl.ServicesKeyring
  • net.sf.basedb.core.LogControl
  • net.sf.basedb.core.LogUtil
  • net.sf.basedb.core.MeanRawDataPropertyExpression (implements net.sf.basedb.core.query.Expression)
  • net.sf.basedb.core.MeasuredBioMaterial.RemainingQuantityAction (implements net.sf.basedb.core.TransactionalAction)
  • net.sf.basedb.core.Message.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.Metadata<C>
  • net.sf.basedb.core.Metadata.BasicData2ItemPropertyPath<C,V> (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.BasicItem2DataPropertyPath<C,V> (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.CollectionPropertyPath<C> (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.CombinedPropertyPath<C,V> (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.ComponentPropertyPath<C,V> (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.DateCopyPropertyPath (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.EntityPropertyPath<C,V> (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.EvictPropertyPath<C> (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.IdentifierPropertyPath (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.MapPropertyPath (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.NoopPropertyPath<C> (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Metadata.ReporterScore2DataPropertyPath (implements net.sf.basedb.core.Metadata.PropertyPath<C,V>)
  • net.sf.basedb.core.Migration (implements org.hibernate.jdbc.Work)
  • net.sf.basedb.core.MultiPermissions
  • net.sf.basedb.core.NameableUtil
  • net.sf.basedb.core.News.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • java.io.FilterOutputStream
      • java.io.BufferedOutputStream
        • net.sf.basedb.core.File.UploadStream
  • net.sf.basedb.core.OwnableUtil
  • net.sf.basedb.core.ParameterInfo
  • net.sf.basedb.core.ParameterType<T>
    • net.sf.basedb.core.BooleanParameterType
    • net.sf.basedb.core.DateParameterType
    • net.sf.basedb.core.DoubleParameterType
    • net.sf.basedb.core.FileParameterType
    • net.sf.basedb.core.FloatParameterType
    • net.sf.basedb.core.IntegerParameterType
    • net.sf.basedb.core.ItemParameterType<T>
    • net.sf.basedb.core.LongParameterType
    • net.sf.basedb.core.PathParameterType
    • net.sf.basedb.core.StringParameterType
      • net.sf.basedb.core.PasswordParameterType
    • net.sf.basedb.core.TimestampParameterType
  • net.sf.basedb.core.ParameterValuesImpl (implements net.sf.basedb.core.plugin.ParameterValues)
  • net.sf.basedb.core.Path
  • net.sf.basedb.core.PluginParameter<T>
  • net.sf.basedb.core.PluginPermission
  • net.sf.basedb.core.PluginRequest<P>
    • net.sf.basedb.core.PluginConfigurationRequest
    • net.sf.basedb.core.PluginExecutionRequest (implements java.lang.Runnable)
  • net.sf.basedb.core.PluginRequest.RequestImpl (implements net.sf.basedb.core.plugin.Request)
  • net.sf.basedb.core.PluginResponse
  • net.sf.basedb.core.PluginResponse.ResponseImpl (implements net.sf.basedb.core.plugin.Response)
  • net.sf.basedb.core.PredefinedQuery
  • net.sf.basedb.core.Presets (implements java.lang.Iterable<T>)
  • net.sf.basedb.core.Presets.Preset (implements java.lang.Iterable<T>)
  • net.sf.basedb.core.Project.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.ProjectPermissions
  • net.sf.basedb.core.ProjectSpecificAnnotationsManager (implements net.sf.basedb.core.TransactionalAction)
  • net.sf.basedb.core.ProjectSpecificAnnotationsManager.AnnotationInfo
  • net.sf.basedb.core.PropertyFilter
  • net.sf.basedb.core.QueryExecutor
  • net.sf.basedb.core.QueryExecutor.CancelableSession (implements net.sf.basedb.core.QueryExecutor.Cancelable)
  • net.sf.basedb.core.QueryExecutor.CancelableStatelessSession (implements net.sf.basedb.core.QueryExecutor.Cancelable)
  • net.sf.basedb.core.QueryExecutor.CancelableStatement (implements net.sf.basedb.core.QueryExecutor.Cancelable)
  • net.sf.basedb.core.QueryExecutor.FutureItem<T> (implements java.util.concurrent.Callable<V>)
  • net.sf.basedb.core.QueryExecutor.FutureResultSet (implements java.util.concurrent.Callable<V>)
  • net.sf.basedb.core.QueryExecutor.FutureScrollIterator<T> (implements java.util.concurrent.Callable<V>)
  • net.sf.basedb.core.QueryExecutor.FutureUpdate (implements java.util.concurrent.Callable<V>)
  • net.sf.basedb.core.QueryRuntimeFilterFactory
  • net.sf.basedb.core.QueryRuntimeFilterFactory.AnnotatableFilter (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.QueryRuntimeFilterFactory.BasicFilter (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.QueryRuntimeFilterFactory.ChainedFilter (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.QueryRuntimeFilterFactory.ChildFilter (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.QueryRuntimeFilterFactory.DenyAllFilter (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.QueryRuntimeFilterFactory.OwnableFilter (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.QueryRuntimeFilterFactory.RemovableFilter (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.QueryRuntimeFilterFactory.ShareableFilter (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.QueryRuntimeFilterManager
  • net.sf.basedb.core.Quota.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.RawBioAssayPropertyExpression (implements net.sf.basedb.core.query.Expression)
  • net.sf.basedb.core.RawDataBatcher.FeatureInfo
  • net.sf.basedb.core.RawDataPropertyExpression (implements net.sf.basedb.core.query.Expression)
  • net.sf.basedb.core.RawDataType (implements java.lang.Comparable<T>)
  • net.sf.basedb.core.RawDataTypes
  • net.sf.basedb.core.RawDataTypes.NameComparator (implements java.util.Comparator<T>)
  • net.sf.basedb.core.RawDataUtil
  • net.sf.basedb.core.RealJoin (implements net.sf.basedb.core.query.Join)
  • net.sf.basedb.core.RealTable
  • net.sf.basedb.core.Reporter
  • net.sf.basedb.core.ReporterListJoin (implements net.sf.basedb.core.query.Join)
  • net.sf.basedb.core.ReporterPropertyExpression (implements net.sf.basedb.core.query.Expression)
  • net.sf.basedb.core.ReporterScore
  • net.sf.basedb.core.ReporterScoreResultIterator (implements net.sf.basedb.core.query.ResultIterator<I>)
  • net.sf.basedb.core.RequestInformation
  • net.sf.basedb.core.hibernate.ResultSetWork<R> (implements org.hibernate.jdbc.ReturningWork<T>)
    • net.sf.basedb.core.AbstractSqlQuery.CountWork
  • net.sf.basedb.core.Role.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.ScrollIterator<E> (implements java.lang.AutoCloseable, java.util.Iterator<E>)
  • net.sf.basedb.core.ServiceSessionControl.FlushSessionAction (implements net.sf.basedb.core.TransactionalAction)
  • net.sf.basedb.core.ServiceSessionControl.SessionFactoryConfiguration
  • net.sf.basedb.core.ServicesUtil
  • net.sf.basedb.core.Session.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.SessionControl (implements java.lang.AutoCloseable)
    • net.sf.basedb.core.PluginSessionControl
    • net.sf.basedb.core.ServiceSessionControl
  • net.sf.basedb.core.SessionControl.ClientInfo
  • net.sf.basedb.core.SessionControl.LoginInfo
  • net.sf.basedb.core.SessionControl.SettingInfo
  • net.sf.basedb.core.SessionControl.UnverifiedDeviceInfo
  • net.sf.basedb.core.ShareableUtil
  • net.sf.basedb.core.SimpleProgressReporter (implements net.sf.basedb.core.ProgressReporter)
    • net.sf.basedb.core.SimpleAbsoluteProgressReporter (implements net.sf.basedb.core.AbsoluteProgressReporter)
  • net.sf.basedb.core.StringUtil
  • net.sf.basedb.core.SystemItems
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • net.sf.basedb.core.BaseException
          • net.sf.basedb.core.ConfigurationException
          • net.sf.basedb.core.ConnectionClosedException
          • net.sf.basedb.core.DatabaseException
          • net.sf.basedb.core.DetachedItemException
          • net.sf.basedb.core.DeviceNotVerifiedException
          • net.sf.basedb.core.InvalidDataException
            • net.sf.basedb.core.DateFormatException
            • net.sf.basedb.core.DisallowedValueException
            • net.sf.basedb.core.InvalidAnnotationException
            • net.sf.basedb.core.InvalidPathException
            • net.sf.basedb.core.InvalidUseOfNullException
            • net.sf.basedb.core.ItemAlreadyExistsException
            • net.sf.basedb.core.ItemNotFoundException
            • net.sf.basedb.core.NumberOutOfRangeException
            • net.sf.basedb.core.ParameterException
            • net.sf.basedb.core.QuotaException
            • net.sf.basedb.core.StringTooLongException
            • net.sf.basedb.core.UnsavedItemException
            • net.sf.basedb.core.UnsupportedFileFormatException
          • net.sf.basedb.core.InvalidPasswordException
          • net.sf.basedb.core.InvalidRelationException
          • net.sf.basedb.core.LoginException
          • net.sf.basedb.core.PermissionDeniedException
            • net.sf.basedb.core.AccountExpiredException
            • net.sf.basedb.core.AlreadyLoggedInException
            • net.sf.basedb.core.ItemInUseException
            • net.sf.basedb.core.ItemModifiedException
            • net.sf.basedb.core.NotLoggedInException
  • java.util.TimerTask (implements java.lang.Runnable)
    • net.sf.basedb.core.Application.DbCleaner
    • net.sf.basedb.core.Application.SessionControlCacheCleaner
    • net.sf.basedb.core.InternalJobQueue
    • net.sf.basedb.core.Keyring.ReloadTask
  • net.sf.basedb.core.Trashcan
  • net.sf.basedb.core.Trashcan.CircularRefInfo
  • net.sf.basedb.core.Update
  • net.sf.basedb.core.Update.SchemaChange
    • net.sf.basedb.core.Update.DropColumnChange
  • net.sf.basedb.core.User.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.UserDevice.QueryRuntimeFilterImpl (implements net.sf.basedb.core.QueryRuntimeFilter)
  • net.sf.basedb.core.UserPermissions
  • net.sf.basedb.core.Values
  • net.sf.basedb.core.Version
  • net.sf.basedb.core.VirtualColumn

Interface Hierarchy

• net.sf.basedb.core.AccessControlled
  • net.sf.basedb.core.Identifiable
    • net.sf.basedb.core.Annotatable
      • net.sf.basedb.core.AnnotatableProxy
    • net.sf.basedb.core.FileAttachable
    • net.sf.basedb.core.FileStoreEnabled
    • net.sf.basedb.core.Listable (also extends net.sf.basedb.core.Nameable)
    • net.sf.basedb.core.Nameable
      • net.sf.basedb.core.Listable (also extends net.sf.basedb.core.Identifiable)
    • net.sf.basedb.core.Ownable
      • net.sf.basedb.core.DiskConsumable (also extends net.sf.basedb.core.Controlled)
      • net.sf.basedb.core.Shareable
    • net.sf.basedb.core.Registered
    • net.sf.basedb.core.Removable
    • net.sf.basedb.core.Subtypable
    • net.sf.basedb.core.SystemItem
• java.lang.AutoCloseable
  • net.sf.basedb.core.Batcher
• net.sf.basedb.core.ClonableReporterQuery
• net.sf.basedb.core.Controlled
  • net.sf.basedb.core.DiskConsumable (also extends net.sf.basedb.core.Ownable)
  • net.sf.basedb.core.Transactional
  • net.sf.basedb.core.Validatable
• net.sf.basedb.core.Metadata.PropertyPath<C,V>
• net.sf.basedb.core.ProgressReporter
  • net.sf.basedb.core.AbsoluteProgressReporter
• net.sf.basedb.core.QueryExecutor.Cancelable
• net.sf.basedb.core.QueryRuntimeFilter
• net.sf.basedb.core.TransactionalAction
• net.sf.basedb.core.UsableDataFileType

Annotation Type Hierarchy

• net.sf.basedb.core.SubtypableRelatedItems (implements java.lang.annotation.Annotation)
• net.sf.basedb.core.SupportsPushAnnotations (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • net.sf.basedb.core.Annotation.Source
    • net.sf.basedb.core.AnnotationBatcher.Change
    • net.sf.basedb.core.BioMaterialEvent.Type
    • net.sf.basedb.core.BioWell.LockMode
    • net.sf.basedb.core.ExtraValue.CoordinateType
    • net.sf.basedb.core.FeatureIdentificationMethod
    • net.sf.basedb.core.Formula.AverageMethod
    • net.sf.basedb.core.Formula.Parser
    • net.sf.basedb.core.Formula.Type
    • net.sf.basedb.core.Include
    • net.sf.basedb.core.IntensityTransform
    • net.sf.basedb.core.Item
    • net.sf.basedb.core.ItemContext.SortDirection
    • net.sf.basedb.core.ItemList.SynchronizeOption
    • net.sf.basedb.core.Job.ExecutionTime
    • net.sf.basedb.core.Job.Status
    • net.sf.basedb.core.Job.Type
    • net.sf.basedb.core.Location
    • net.sf.basedb.core.Operator
    • net.sf.basedb.core.Path.Type
    • net.sf.basedb.core.Permission
    • net.sf.basedb.core.ReporterCloneBatcher.CloneSource
    • net.sf.basedb.core.SyncFilter.SourceItemTransform
    • net.sf.basedb.core.Transactional.Action
    • net.sf.basedb.core.Type
    • net.sf.basedb.core.VirtualTable