Package net.sf.basedb.core

Class BioPlateEventParticipant

java.lang.Object

net.sf.basedb.core.BasicItem

net.sf.basedb.core.ChildItem

net.sf.basedb.core.BioPlateEventParticipant

All Implemented Interfaces:

AccessControlled, Identifiable

public class BioPlateEventParticipant
extends ChildItem

Holds information about a bioplate that is participating in a bioplate event. The bioplate may have a specific 'role' and an 'index' (if the ordering among multiple plates is important). The BASE core itself doesn't requires or makes any use of those attributes. It is also possible to link individual biomaterial events to a participant.

A bioplate participant object is formally a child item to the bioplate event, but users that has read permission to the bioplate also get read permission to the participant object.

Since:

2.17

Author:

Nicklas

Last modified

$Date: 2017-05-22 14:35:27 +0200 (må, 22 maj 2017) $

Field Summary

Fields

Modifier and Type	Field	Description
static final int	MAX_ROLE_LENGTH	The maximum length of the role string that can be stored in the database.
static final Item	TYPE	The type of item represented by this class.

Constructor Summary

Constructors

Constructor	Description
BioPlateEventParticipant(BioPlateEventParticipantData data)

Method Summary

Modifier and Type	Method	Description
BioPlate	getBioPlate()	Get the BioPlate.
static BioPlateEventParticipant	getById(DbControl dc, int id)	Get a BioPlateEventParticipant item when you know the id.
(package private) BioPlateEventParticipantData	getData()	Get the BasicData object that holds all data for this item.
BioPlateEvent	getEvent()	Get the BioPlateEvent.
int	getIndex()	Get the index of the plate in this event.
(package private) static BioPlateEventParticipant	getNew(DbControl dc, BioPlateEvent event, BioPlate plate)	Creates a new participant for the given event and bioplate.
static ItemQuery<BioPlateEventParticipant>	getQuery(BioPlate bioPlate)	Get a query configured to return all event participants for a bioplate.
static ItemQuery<BioPlateEventParticipant>	getQuery(BioPlateEvent event)	Get a query configured to return all participants for a bioplate event.
String	getRole()	Get the role that the plate has in this event.
(package private) SharedData	getSharedParent()	Get the shareable parent item of this child item.
Item	getType()	Get the type of item represented by the object.
(package private) void	initPermissions(int granted, int denied)	If the logged in user has read permission for the parent, read permission is granted.
(package private) void	onBeforeCommit(Transactional.Action action)	This method is called on each Transactional item and on all items if the action is Transactional.Action.CREATE or Transactional.Action.DELETE before a commit is issued to the database.
void	setIndex(int index)	Set the index of the plate in this event.
void	setRole(String role)	Set the role that the plate has in this event.

Methods inherited from class net.sf.basedb.core.ChildItem

getPermissionForUse, getPermissionForWriteDeleteAndCreate, getPluginPermissions

Methods inherited from class net.sf.basedb.core.BasicItem

addAnnotatableParents, addUsingItems, addUsingItems, breakCircularReferences, checkBatchAnnotatableUsage, checkPermission, equals, getBasicData, getDbControl, getId, getPermissions, getSessionControl, getUsingItems, getVersion, hashCode, hasPermission, isDetached, isInDatabase, isUsed, onAfterCommit, onAfterInsert, onRollback, setDbControl, setProjectDefaults, toString, validate

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Details

TYPE

public static final Item TYPE

The type of item represented by this class.

See Also:

• Item.BIOPLATEEVENTPARTICIPANT
• getType()

MAX_ROLE_LENGTH

public static final int MAX_ROLE_LENGTH

The maximum length of the role string that can be stored in the database.

See Also:

• setRole(String)
• Constant Field Values

Constructor Details

BioPlateEventParticipant

BioPlateEventParticipant(BioPlateEventParticipantData data)

Method Details

getNew

static BioPlateEventParticipant getNew(DbControl dc,
 BioPlateEvent event,
 BioPlate plate)

Creates a new participant for the given event and bioplate.

See Also:

• BioPlateEvent.addParticipant(BioPlate, String, int)

getById

public static BioPlateEventParticipant getById(DbControl dc,
 int id)
                                        throws ItemNotFoundException,
PermissionDeniedException,
BaseException

Get a BioPlateEventParticipant item when you know the id.

Parameters:

dc - The DbControl which will be used for permission checking and database access.

id - The id of the item to load

Returns:

The BioPlateEventParticipant item

Throws:

ItemNotFoundException - If an item with the specified id is not found

PermissionDeniedException - If the logged in user doesn't have read permission to the item

BaseException - If there is another error

getQuery

public static ItemQuery<BioPlateEventParticipant> getQuery(BioPlateEvent event)
                                                    throws InvalidDataException

Get a query configured to return all participants for a bioplate event.

Parameters:

event - The event to get participants for (null is not allowed)

Returns:

An ItemQuery object

Throws:

InvalidUseOfNullException - If the event parameter is null

InvalidDataException

getQuery

public static ItemQuery<BioPlateEventParticipant> getQuery(BioPlate bioPlate)
                                                    throws InvalidDataException

Get a query configured to return all event participants for a bioplate.

Parameters:

bioPlate - The bioplate to get participants for (null is not allowed)

Returns:

An ItemQuery object

Throws:

InvalidUseOfNullException - If the bioplate parameter is null

InvalidDataException

getData

BioPlateEventParticipantData getData()

Description copied from class: BasicItem

Get the BasicData object that holds all data for this item.

Specified by:

getData in class BasicItem

getType

public Item getType()

Description copied from interface: Identifiable

Get the type of item represented by the object. The returned value is one of the values defined in the Item enumeration.

Returns:

A value indicating the type of item

getSharedParent

SharedData getSharedParent()

Description copied from class: ChildItem

Get the shareable parent item of this child item. This is used by the ChildItem.initPermissions(int, int) method to calculate the logged in user's permissions for the child item.

Specified by:

getSharedParent in class ChildItem

Returns:

The parent item

initPermissions

void initPermissions(int granted,
 int denied)
              throws BaseException

Description copied from class: ChildItem

If the logged in user has read permission for the parent, read permission is granted. If the logged in user has the permission returned by the ChildItem.getPermissionForWriteDeleteAndCreate() method for the parent, WRITE, DELETE and CREATE permission is granted.

Overrides:

initPermissions in class ChildItem

Parameters:

granted - Permissions that have been granted by the subclass

denied - Permissions that have been denied by the subclass

Throws:

BaseException - If the permissions couldn't be initialised

onBeforeCommit

void onBeforeCommit(Transactional.Action action)
             throws BaseException

Description copied from class: BasicItem

This method is called on each Transactional item and on all items if the action is Transactional.Action.CREATE or Transactional.Action.DELETE before a commit is issued to the database. If the subclass overrides this method it must also propagate the call to the superclass, ie. super.onBeforeCommit(action).

Overrides:

onBeforeCommit in class BasicItem

Throws:

BaseException - If there is an error

See Also:

• Transactional
• Developer documentation: Transactions
• Developer documentation: Coding rules and guidelines for item classes

getBioPlate

public BioPlate getBioPlate()
                     throws PermissionDeniedException,
BaseException

Get the BioPlate.

Throws:

PermissionDeniedException - If the logged in user doesn't have read permission for the bioplate

BaseException - If there is another error

getEvent

public BioPlateEvent getEvent()
                       throws PermissionDeniedException,
BaseException

Get the BioPlateEvent.

Throws:

PermissionDeniedException - If the logged in user doesn't have read permission for the event

BaseException - If there is another error

getRole

public String getRole()

Get the role that the plate has in this event. The role is a string defined by the client application.

setRole

public void setRole(String role)

Set the role that the plate has in this event. The role is a string defined by the client application.

getIndex

public int getIndex()

Get the index of the plate in this event. This has no meaning unless the event require that the plates are ordered.

setIndex

public void setIndex(int index)

Set the index of the plate in this event. This has no meaning unless the event require that the plates are ordered.