Timeline



Jun 18, 2009:

2:04 PM Changeset [4976] by Nicklas Nordborg
Fixes #1321: Add exists() and size() to StaticCache? And also added a …
2:04 PM Ticket #1321 (Add exists() and size() to StaticCache) closed by Nicklas Nordborg
fixed: (In [4976]) Fixes #1321: Add exists() and size() to StaticCache? And …

Jun 17, 2009:

11:40 AM Ticket #1188 (Create a super batch importer?) closed by Jari Häkkinen
wontfix: It is difficult to run plug-ins from other plug-ins so this is a won't fix.

Jun 15, 2009:

12:30 PM Changeset [4975] by Nicklas Nordborg
Fixes #1333: Alternate triggering of servlets in extensions
12:30 PM Ticket #1333 (Alternate triggering of servlets in extensions) closed by Nicklas Nordborg
fixed: (In [4975]) Fixes #1333: Alternate triggering of servlets in extensions
11:05 AM Changeset [4974] by Nicklas Nordborg
Merged patch release 2.12.1 to the trunk.
10:53 AM Milestone BASE 2.12.1 completed
Bug fixes for 2.12. Revision Log: log:branches/2.12-stable@4955:4972
10:52 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.12.1 (diff)
10:00 AM Changeset [4973] by Nicklas Nordborg
Changes for future release 2.12.2
9:47 AM Changeset [4972] by Nicklas Nordborg
Tagging version 2.12.1
9:47 AM Changeset [4971] by Nicklas Nordborg
Preparing release 2.12.1
8:37 AM Ticket #1335 (Add support for exporting experimental factors from bioassays list) created by Nicklas Nordborg
See #1334 for background info. It should be possible to do this with a …
8:27 AM Changeset [4970] by Nicklas Nordborg
Fixes #1334: Unable to resolve property: $rba when exporting …
8:22 AM Ticket #1334 (Unable to resolve property: $rba when exporting experimatal factors ...) closed by Nicklas Nordborg
fixed: (In [4969]) Fixes #1334: Unable to resolve property: $rba when …
8:22 AM Changeset [4969] by Nicklas Nordborg
Fixes #1334: Unable to resolve property: $rba when exporting …
8:20 AM Ticket #1334 (Unable to resolve property: $rba when exporting experimatal factors ...) created by Nicklas Nordborg
To reproduce this an experiment with at least one experimental factor …

Jun 12, 2009:

2:16 PM Ticket #1333 (Alternate triggering of servlets in extensions) created by Nicklas Nordborg
Currently, '*.servlet' is used as a triggering pattern for servlets in …

Jun 11, 2009:

3:32 PM Changeset [4968] by Nicklas Nordborg
Fixes #1332: TableWriter?.tablePrintData() doesn't handle null values …
3:32 PM Ticket #1332 (TableWriter.tablePrintData() doesn't handle null values correctly) closed by Nicklas Nordborg
fixed: (In [4968]) Fixes #1332: TableWriter?.tablePrintData() doesn't handle …
2:18 PM Ticket #1332 (TableWriter.tablePrintData() doesn't handle null values correctly) created by Nicklas Nordborg
The problematic line is: […] which either prints the value of 'd' …

Jun 10, 2009:

8:53 AM Changeset [4967] by Nicklas Nordborg
References #1330: Add support function in JavaScript? for parsing AJAX …

Jun 9, 2009:

10:44 AM Changeset [4966] by Nicklas Nordborg
References #1330: Add support function in JavaScript? for parsing AJAX …
10:43 AM Ticket #1331 (BaseFileWriter doesn't escape newline and carrige return as expected) closed by Nicklas Nordborg
fixed: (In [4965]) Fixes #1331: BaseFileWriter? doesn't escape newline and …
10:43 AM Changeset [4965] by Nicklas Nordborg
Fixes #1331: BaseFileWriter? doesn't escape newline and carrige return …
10:41 AM Ticket #1331 (BaseFileWriter doesn't escape newline and carrige return as expected) created by Nicklas Nordborg
The documentation promises to replace newline and carrige return with …
9:20 AM Changeset [4964] by Nicklas Nordborg
References #1330: Add support function in JavaScript? for parsing AJAX …

Jun 8, 2009:

12:09 PM Ticket #1330 (Add support function in JavaScript for parsing AJAX responses) created by Nicklas Nordborg
The GenePattern integration is going to use a lot of Ajax calls to get …
11:56 AM Changeset [4963] by Nicklas Nordborg
References #1329: A plug-in should be able to use a JSP page from an …
11:45 AM Changeset [4962] by Nicklas Nordborg
Fixes #1329: A plug-in should be able to use a JSP page from an …
11:45 AM Ticket #1329 (A plug-in should be able to use a JSP page from an extension for ...) closed by Nicklas Nordborg
fixed: (In [4962]) Fixes #1329: A plug-in should be able to use a JSP page …
8:30 AM GenePattern created by Nicklas Nordborg
8:27 AM Ticket #1329 (A plug-in should be able to use a JSP page from an extension for ...) created by Nicklas Nordborg
A plug-in may currently use a custom JSP page for parameter input. The …

Jun 5, 2009:

1:02 PM Changeset [4961] by Nicklas Nordborg
Fixes #1327: BaseFileExporter? creates two parameter sections if the …
1:02 PM Ticket #1327 (BaseFileExporter creates two parameter sections if the first plug-in ...) closed by Nicklas Nordborg
fixed: (In [4961]) Fixes #1327: BaseFileExporter? creates two parameter …
12:59 PM Ticket #1328 (Remove all or most 'continue' statements from the code) created by Nicklas Nordborg
The 'continue' statement is dangerous. It is very easy to miss that …
12:05 PM Ticket #1327 (BaseFileExporter creates two parameter sections if the first plug-in ...) created by Nicklas Nordborg
For example: If a BASE1 plug-in defines the first parameter as: …
10:57 AM Changeset [4960] by Nicklas Nordborg
Fixes #1326: Base1PluginExecuter doesn't recognise 'intensityX' spot …
10:57 AM Ticket #1326 (Base1PluginExecuter doesn't recognise 'intensityX' spot field if ...) closed by Nicklas Nordborg
fixed: (In [4960]) Fixes #1326: Base1PluginExecuter doesn't recognise …
10:55 AM Ticket #1326 (Base1PluginExecuter doesn't recognise 'intensityX' spot field if ...) created by Nicklas Nordborg
BASE 1 plug-ins should be allowed to specify 'intensity1', …

Jun 4, 2009:

1:00 PM Ticket #1325 (Lists of items (similar funcion as biomaterial lists)) created by Jari Häkkinen
Starting to work with biomaterials and biomaterial lists makes us …
12:56 PM Changeset [4959] by Nicklas Nordborg
Fixes #1323: ExtensionsControl?.init() doesn't remember the …
12:56 PM Ticket #1323 (ExtensionsControl.init() doesn't remember the ServletContext parameter) closed by Nicklas Nordborg
fixed: (In [4959]) Fixes #1323: ExtensionsControl?.init() doesn't remember the …
12:47 PM Ticket #1324 (Check TODO markers in the BASE code) created by Nicklas Nordborg
There are many places in the BASE code that has been marked with …
11:49 AM Ticket #1323 (ExtensionsControl.init() doesn't remember the ServletContext parameter) created by Nicklas Nordborg
This may lead to NullPointerException in any servlet that calls …
8:58 AM Ticket #1322 (StaticCache.cleanUp() should remove empty directories) created by Nicklas Nordborg
The static cache is leaving empty directories behind when old cache …
8:56 AM Ticket #1321 (Add exists() and size() to StaticCache) created by Nicklas Nordborg
The exists() method should return a boolean indicating if a cache …
8:54 AM Ticket #1320 (Complete the implementation of SessionControl.reloadSettings()) created by Nicklas Nordborg
This method has an option to save current user-specific settings …

Jun 1, 2009:

8:35 AM Changeset [4958] by Nicklas Nordborg
Fixes #1319: JEP intensity transformer dialogue complains if …
8:35 AM Ticket #1319 (JEP intensity transformer dialogue complains if 'Resulting transform' ...) closed by Nicklas Nordborg
fixed: (In [4958]) Fixes #1319: JEP intensity transformer dialogue complains …

May 29, 2009:

4:34 PM Ticket #1319 (JEP intensity transformer dialogue complains if 'Resulting transform' ...) created by Jari Häkkinen
I try to run the plug-in without any changes to the defaults but it …
2:41 PM Ticket #1318 (Extension servlets can't use 'forward' to continue processing a ...) closed by Nicklas Nordborg
fixed: (In [4957]) Fixes #1318: Extension servlets can't use 'forward' to …
2:41 PM Changeset [4957] by Nicklas Nordborg
Fixes #1318: Extension servlets can't use 'forward' to continue …
2:37 PM Ticket #1318 (Extension servlets can't use 'forward' to continue processing a ...) created by Nicklas Nordborg
The regular procedure for a servlet to forward the processing to …

May 27, 2009:

2:59 PM Milestone BASE 2.12 completed
2:58 PM Milestone BASE 2.11.1 completed
Bug fixes for 2.11. Revision Log: log:branches/2.11-stable@4862:4949
2:57 PM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.12 (diff)
2:51 PM Changeset [4956] by Nicklas Nordborg
Changes for future release 2.12.1
2:41 PM Changeset [4955] by Nicklas Nordborg
Tagging version 2.12
2:40 PM Changeset [4954] by Nicklas Nordborg
Preparing release 2.12
12:10 PM Changeset [4953] by Nicklas Nordborg
Changes for future release 2.13
12:09 PM Changeset [4952] by Nicklas Nordborg
Forking new minor version 2.12 branch
12:07 PM Changeset [4951] by Nicklas Nordborg
Merged patch release 2.11.1 to the trunk.
11:58 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.11.1 (diff)
11:53 AM Changeset [4950] by Nicklas Nordborg
Changes for future release 2.11.2
11:37 AM Changeset [4949] by Nicklas Nordborg
Tagging version 2.11.1
11:36 AM Changeset [4948] by Nicklas Nordborg
Preparing release 2.11.1
8:17 AM Changeset [4947] by Nicklas Nordborg
Want to check if specifying charset=utf-8 makes the names display correctly

May 26, 2009:

8:20 PM WikiStart edited by Jari Häkkinen
Added link to credits.txt (diff)
8:14 PM Changeset [4946] by Jari Häkkinen
Changed credits.txt layout and prepared it for wiki presentation.
1:28 PM Changeset [4945] by Martin Svensson
Fixes #1313
1:28 PM Ticket #1313 (Autoinstaller wizzard should detect and display changed plug-ins) closed by Martin Svensson
fixed: (In [4945]) Fixes #1313
11:02 AM Ticket #1301 (BASE and GenePattern) closed by Nicklas Nordborg
duplicate: Moved to BASE plug-ins site: …
9:37 AM Ticket #1313 (Autoinstaller wizzard should detect and display changed plug-ins) reopened by Martin Svensson
Install all option is not visible if the jar-file of a plug-in …

May 25, 2009:

10:59 AM Ticket #1317 (Table export of items with åäö in name generates strange characters in file) closed by Nicklas Nordborg
invalid
10:55 AM Changeset [4944] by Nicklas Nordborg
Fixes #1185: Manual transform creator
10:55 AM Ticket #1185 (Manual transform creator) closed by Nicklas Nordborg
fixed: (In [4944]) Fixes #1185: Manual transform creator

May 20, 2009:

3:54 PM Ticket #1317 (Table export of items with åäö in name generates strange characters in file) created by Jari Häkkinen
I have added a screenshot and the exported file. These should explain …
1:30 PM Changeset [4943] by Nicklas Nordborg
References #1185: Manual transform creator It is possible to …
12:50 PM Changeset [4942] by Nicklas Nordborg
Fixes #1316: Bioassay set view page should display 'Items related to …
12:50 PM Ticket #1316 (Bioassay set view page should display 'Items related to this bioassay set') closed by Nicklas Nordborg
fixed: (In [4942]) Fixes #1316: Bioassay set view page should display 'Items …
11:57 AM Ticket #1316 (Bioassay set view page should display 'Items related to this bioassay set') created by Nicklas Nordborg
It is similar to the 'Items related to this transformation' that is …
11:54 AM Changeset [4941] by Nicklas Nordborg
Fixes #1315: A plug-in which uses 'execute immediately' can't get the …
11:54 AM Ticket #1315 (A plug-in which uses 'execute immediately' can't get the current job ...) closed by Nicklas Nordborg
fixed: (In [4941]) Fixes #1315: A plug-in which uses 'execute immediately' …
11:47 AM Ticket #1315 (A plug-in which uses 'execute immediately' can't get the current job ...) created by Nicklas Nordborg
By looking at the code it seems like the job-id is set when the …
8:42 AM Changeset [4940] by Nicklas Nordborg
References #1290: Change source files to UTF-8 Fixed non UTF-8 character.
7:45 AM Changeset [4939] by Nicklas Nordborg
References #1310: Annotations for protocols Show/validate protocol …

May 19, 2009:

11:24 AM Changeset [4938] by Nicklas Nordborg
Fixes #1310: Annotations for protocols The code worked perfectly …
11:24 AM Ticket #1310 (Annotations for protocols) closed by Nicklas Nordborg
fixed: (In [4938]) Fixes #1310: Annotations for protocols The code worked …
10:58 AM Ticket #742 (Refactor BioAssaySetExporter) closed by Nicklas Nordborg
fixed: This seems to work fine now. Both MeV exporters are in place and working.
9:49 AM Changeset [4937] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Buttons use …
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