Timeline



Jun 9, 2006:

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5:16 PM Changeset [2367] by Johan Enell
reading output from plugin is halfdone
5:16 PM Changeset [2366] by Johan Enell
added static method getFile(DbControl?, Directory, filename)
3:24 PM Changeset [2365] by dominic
resolved return value for isincontext method
11:35 AM Changeset [2364] by dominic
nomsg
11:35 AM Changeset [2363] by dominic
nomsg
11:11 AM Changeset [2362] by Martin Svensson
Removed System.out.print used for debugging
11:06 AM Ticket #280 (Shared item doesn't appear in the list, though the item is shared to ...) created by Martin Svensson
Logged in as Root(Administrator) eg. An item is shared to 'Everyone' …
10:47 AM Changeset [2361] by dominic
nomsg
10:31 AM Changeset [2360] by dominic
nomsg
10:30 AM Changeset [2359] by dominic
nomsg

Jun 8, 2006:

5:22 PM Changeset [2358] by dominic
Commitiing new changes to current revision 2357. …
4:09 PM Changeset [2357] by dominic
Commitiing new changes current revision 2356. After a new check out
3:58 PM Ticket #279 (Permissions, Read and Write,selected when opening the Share-popup ...) created by Martin Svensson
When opening the Share-popup, to set access permissions for other …
12:09 PM Changeset [2356] by dominic
the jsp folder for the anotationtype categories
9:02 AM Ticket #190 (Beyond last page when filter is changed) closed by Martin Svensson
fixed: (In [2355]) Fixes #190 Beyond last page when filter is changed
9:02 AM Changeset [2355] by Martin Svensson
Fixes #190 Beyond last page when filter is changed

Jun 7, 2006:

10:53 AM Ticket #157 (Display and link to associated items from list page) closed by Martin Svensson
fixed: (In [2354]) Fixes #157 Display and link to associated items from list page
10:53 AM Changeset [2354] by Martin Svensson
Fixes #157 Display and link to associated items from list page

Jun 6, 2006:

9:50 PM Ticket #278 (Trying to create a new plate.) created by tyoung@…
I'd previously created a dummy plate geometry and plate type, and upon …
5:54 PM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) created by DionLepp
When going to the Plugins Definitions page, only 7 results are …
5:41 PM Ticket #276 (Typo in alert box when attempting to "share") created by anonymous
When viewing a list (samples, extracts, etc) I click on "Share" …

Jun 2, 2006:

12:20 PM Changeset [2353] by dominic
nomsg
8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) closed by Martin Svensson
duplicate
8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) reopened by Martin Svensson
8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) closed by Martin Svensson
worksforme
8:01 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) created by Longfei Yu <lyu@…>
When I view an experiment, then go to bioassay sets by clicking the …

Jun 1, 2006:

4:07 PM Changeset [2352] by Nicklas Nordborg
First version of specification for Any-to-any. References #107.
2:09 PM DeveloperInformation edited by Jari Häkkinen
Changed plugin example package link to point to autogenerated location. (diff)
1:59 PM Changeset [2351] by Jari Häkkinen
Reverting link change.
11:13 AM Changeset [2350] by Nicklas Nordborg
Install filter formulas for all channels: All intensities > 0
11:05 AM Changeset [2349] by Jari Häkkinen
Updated link to example plug-ins.
11:01 AM Ticket #177 (Store title and description of plugin parameters, not just the name) closed by Nicklas Nordborg
fixed: (In [2348]) Fixes #177: Store title and description of plugin …
11:01 AM Changeset [2348] by Nicklas Nordborg
Fixes #177: Store title and description of plugin parameters, not just …
10:12 AM DeveloperInformation edited by Jari Häkkinen
Updated link to plug-in examples. (diff)
9:28 AM Changeset [2347] by Nicklas Nordborg
Skips spots with coordinates falling outside the image instead of …
8:35 AM Changeset [2346] by Nicklas Nordborg
Fixed compilation bug due to core interface changes.

May 31, 2006:

6:39 PM Changeset [2345] by dominic
Merging trunk changes r2125:2342 into branch dominic_annotations
6:00 PM Ticket #274 (cannot navigate between tabs in experiment) created by leppd@…
When selecting an experiment, there are 2 tabs available: "Properties" …
1:41 PM Changeset [2344] by Nicklas Nordborg
Updated UML doc for changes in ticket #206.
1:17 PM Ticket #206 (Display and filter on permisssion in lists) closed by Nicklas Nordborg
fixed: (In [2343]) Fixes #206: Display and filter on permisssion in lists …
1:17 PM Changeset [2343] by Nicklas Nordborg
Fixes #206: Display and filter on permisssion in lists NOTE! This …
12:47 AM Changeset [2342] by Jari Häkkinen
Compilation of Affymetrix discussions.

May 30, 2006:

8:07 PM Changeset [2341] by Nicklas Nordborg
Fixed classpath for installation program
2:22 PM Ticket #175 (Move core plugins to a standalone compilation unit) closed by Nicklas Nordborg
fixed: (In [2340]) Fixes #175: Move core plugins to a standalone compilation unit
2:22 PM Changeset [2340] by Nicklas Nordborg
Fixes #175: Move core plugins to a standalone compilation unit
12:42 PM Changeset [2339] by dominic
nomsg
12:32 PM Changeset [2338] by dominic
This class was modified to include testing annotation type categories …
12:27 PM Changeset [2337] by dominic
This class is the core class for annotation type categories
12:10 PM Ticket #273 (Make rest of web gui user-friendly) closed by Nicklas Nordborg
duplicate
12:09 PM Ticket #273 (Make rest of web gui user-friendly) created by Nicklas Nordborg
This ticket covers item not covered by tickets #268, #269, #270 and …
12:06 PM Ticket #272 (Make rest of web gui user-friendly) created by Nicklas Nordborg
This ticket covers item not covered by tickets #268, #269, #270 and …
12:04 PM Ticket #271 (Make admin web gui more user-friendly) created by Nicklas Nordborg
This includes reviewing what information and functionality is …
12:04 PM Ticket #270 (Make array lims web gui more user friendly) created by Nicklas Nordborg
This includes reviewing what information and functionality is …
12:03 PM Ticket #269 (Make hybridizations/experiments web gui more user friendly) created by Nicklas Nordborg
This includes reviewing what information and functionality is …
12:01 PM Ticket #268 (Make biomaterials web gui more user-friendly) created by Nicklas Nordborg
This includes reviewing what information and functionality is …
11:49 AM Ticket #267 (Linking of files to items) created by Nicklas Nordborg
Some features require that files can be linked to other items. For …
11:10 AM Changeset [2336] by dominic
This class is the core class for annotation type categories
9:02 AM Ticket #266 (Strange mouse-over message in some places) created by Jari Häkkinen
An example is when changing roles for an account the mouse-over …
8:55 AM Ticket #265 (Information display when viewing details on roles needs a change) created by Jari Häkkinen
Choosing Administrate->Roles->Power User will display all accounts …

May 29, 2006:

3:21 PM Milestone BASE 2.0 RC2 completed
This milestone includes * Affymetrix support (delayed, will appear …
3:17 PM DownloadPage edited by Jari Häkkinen
RC2 released, new download link. (diff)
3:13 PM Changeset [2335] by Jari Häkkinen
News: RC2 released.
2:21 PM Changeset [2334] by Nicklas Nordborg
Releasing RC2
2:18 PM Changeset [2333] by Nicklas Nordborg
Preparing for RC2
2:14 PM Changeset [2332] by Martin Svensson
Correct a misspelt menu
1:42 PM Ticket #149 (Plugin bridge that allows BASE1 plug-ins to be run in BASE2) closed by Johan Enell
duplicate
11:25 AM Ticket #264 (Base1 plug-in executer enhancements) created by Johan Enell
* Export annotations For each BioAssay? the annotation from the …
11:12 AM Ticket #204 (Base1 plug-in runner) closed by Johan Enell
fixed
9:27 AM Changeset [2331] by Johan Enell
9:27 AM Changeset [2330] by Johan Enell
pluginexecuter create a serial basefile no annotations
8:58 AM Changeset [2329] by Jari Häkkinen
Bumped to RC2. Changed contributor list.
8:55 AM Changeset [2328] by Jari Häkkinen
Bumped RC1 to RC2. Fixed minor issues.
8:29 AM Ticket #261 (hardware and software sharing problem) closed by Martin Svensson
fixed: The problem couldn't be recreated in build #2327
8:27 AM WikiStart edited by Nicklas Nordborg
(diff)

May 24, 2006:

2:55 PM Changeset [2327] by Nicklas Nordborg
Added documentation for the plot servlet and plot utilities
12:20 PM Changeset [2326] by Nicklas Nordborg
Help text for plugin sections is now displayed in the web client.
11:51 AM Changeset [2325] by Nicklas Nordborg
Added and cleaned up some JavaDoc?
11:51 AM Ticket #84 (getRequestInformation returns TODO in description fields for many plugins) closed by Nicklas Nordborg
fixed: (In [2324]) Fixes #84: getRequestInformation returns TODO in …
11:50 AM Changeset [2324] by Nicklas Nordborg
Fixes #84: getRequestInformation returns TODO in description fields …
11:43 AM DeveloperInformation edited by Jari Häkkinen
(diff)
11:39 AM WikiStart edited by Jari Häkkinen
Added todo link. Clarified text on plug-ins. (diff)
11:11 AM WikiStart edited by Jari Häkkinen
Moved mailing list to another page. (diff)
11:10 AM MailingLists created by Jari Häkkinen
11:07 AM Changeset [2323] by Jari Häkkinen
Added news item about the new BASE web site. Removed obsolete …
10:53 AM WikiStart edited by Jari Häkkinen
Added demo server information. (diff)
10:26 AM WikiStart edited by Jari Häkkinen
Spelling error fixed (diff)
10:26 AM Changeset [2322] by Nicklas Nordborg
Fixed some Javadoc items
10:25 AM Changeset [2321] by Nicklas Nordborg
Log SQL statements
9:41 AM Changeset [2320] by Nicklas Nordborg
Now finds the parent <tbl:table> tag.
9:39 AM Changeset [2319] by Nicklas Nordborg
Validate that no expressions are null
9:22 AM Changeset [2318] by Nicklas Nordborg
Set row and column coordinate of a feature
9:03 AM Ticket #209 (Add JepMapper to FlatFileParser) closed by Nicklas Nordborg
fixed: (In [2317]) Fixes #209: Add JepMapper? to FlatFileParser?
9:03 AM Changeset [2317] by Nicklas Nordborg
Fixes #209: Add JepMapper? to FlatFileParser?
2:35 AM Changeset [2316] by Jari Häkkinen
Moved download information to the Trac wiki.
2:29 AM DownloadPage edited by Jari Häkkinen
(diff)
2:20 AM DownloadPage edited by Jari Häkkinen
First finalized version. (diff)
2:04 AM DownloadPage edited by Jari Häkkinen
(diff)
1:28 AM DownloadPage edited by Jari Häkkinen
(diff)
12:53 AM DownloadPage created by Jari Häkkinen
12:49 AM WikiStart edited by Jari Häkkinen
(diff)

May 23, 2006:

3:01 PM Ticket #263 (Update to latest versions of 3rd-party software) created by Nicklas Nordborg
Well, maybe we don't need to update everything, but we definitely have …
2:50 PM Changeset [2315] by Nicklas Nordborg
Now contains correct jar file information and version numbers
2:31 PM WikiStart edited by Jari Häkkinen
(diff)
1:42 PM Ticket #262 (Overview of an experiment) created by Nicklas Nordborg
Create a plugin or something that generates an overview of all items …
1:20 PM DeveloperInformation edited by Jari Häkkinen
(diff)
1:18 PM Ticket #260 (Remove AffyFeatures table) closed by Nicklas Nordborg
fixed: (In [2314]) Fixes #260: Remove AffyFeatures? table Also removed a lot …
1:18 PM Changeset [2314] by Nicklas Nordborg
Fixes #260: Remove AffyFeatures? table Also removed a lot of unused …
1:10 PM WikiStart edited by Jari Häkkinen
(diff)
1:09 PM DeveloperInformation created by Jari Häkkinen
12:09 PM WikiStart edited by Jari Häkkinen
More fixes and additions. (diff)
11:59 AM WikiStart edited by Jari Häkkinen
(diff)
11:55 AM WikiStart edited by Jari Häkkinen
(diff)
11:52 AM WikiStart edited by Jari Häkkinen
Added mailing list information (diff)
11:43 AM WikiStart edited by Jari Häkkinen
(diff)
11:40 AM Ticket #261 (hardware and software sharing problem) created by Petr Divina <divina@…>
Sharing of the software and hardware items among users and groups does …
11:23 AM Changeset [2313] by Nicklas Nordborg
Added possibility to create external links for extended properties
11:08 AM Changeset [2312] by Nicklas Nordborg
Removed unused import
10:39 AM Ticket #260 (Remove AffyFeatures table) created by Nicklas Nordborg
This should never be used anyway. It would be too much data.
8:20 AM Changeset [2311] by Nicklas Nordborg
Renamed misspelled file name

May 22, 2006:

3:00 PM Changeset [2310] by Nicklas Nordborg
Fixes #256: Filter updates to the Job.ProgressReporterImpl?
3:00 PM Ticket #256 (Filter updates to the Job.ProgressReporterImpl) closed by Nicklas Nordborg
fixed: (In [2310]) Fixes #256: Filter updates to the Job.ProgressReporterImpl?
2:37 PM Changeset [2309] by Nicklas Nordborg
Added "tools" column to bioassayset list. Links to plot tool, run …
1:47 PM Changeset [2308] by Nicklas Nordborg
Hide plugin configuration when there is none to select
12:43 PM Changeset [2307] by Nicklas Nordborg
Plot function generates error image with stack trace
12:34 PM Changeset [2306] by Jari Häkkinen
Fixed subversion proterties.
12:16 PM Changeset [2305] by Jari Häkkinen
Removed stray CRLF characters, added missing svn properties.
11:37 AM Changeset [2304] by Jari Häkkinen
Changed copyright statement.
11:21 AM Changeset [2303] by Nicklas Nordborg
USE permission is now enough to create bioassay sets
10:59 AM Ticket #259 (A job's progress doesn't get upadated when a job is executing in ...) created by Nicklas Nordborg
Probably due to caching of the job information by the second-level cache.
10:27 AM Changeset [2302] by Nicklas Nordborg
Fixed Javadoc warnings
9:30 AM Ticket #216 (Show deleted directories in file manager) closed by Nicklas Nordborg
fixed: (In [2301]) Fixes #216: Show deleted directories in file manager
9:30 AM Changeset [2301] by Nicklas Nordborg
Fixes #216: Show deleted directories in file manager
9:03 AM Ticket #211 (Show list of child bioassay sets/transformations when viewing a ...) closed by Nicklas Nordborg
fixed

May 20, 2006:

9:48 AM Changeset [2300] by Jari Häkkinen
Upgraded demo server to revision 2299.

May 19, 2006:

4:09 PM Ticket #254 (Can't run an analysis plugin with Internet explorer) closed by Nicklas Nordborg
fixed: (In [2299]) Fixes #254: Can't run an analysis plugin with Internet …
4:09 PM Changeset [2299] by Nicklas Nordborg
Fixes #254: Can't run an analysis plugin with Internet explorer …
4:03 PM Changeset [2298] by Nicklas Nordborg
Adds child analysis tree to view pages for bioassay set and transformation
4:02 PM Ticket #258 (All view pages with an Annotations tab have duplicate html documents) closed by Nicklas Nordborg
fixed: (In [2297]) Fixes #258: All view pages with an Annotations tab have …
4:02 PM Changeset [2297] by Nicklas Nordborg
Fixes #258: All view pages with an Annotations tab have duplicate html …
1:37 PM Ticket #258 (All view pages with an Annotations tab have duplicate html documents) created by Nicklas Nordborg
The contents of the Annotations tab is generated by a <jsp:include> …
12:18 PM Ticket #247 (Postgres needs a filter when the log() function is used) closed by Nicklas Nordborg
fixed: (In [2296]) Fixes #247: Postgres needs a filter when the log() …
12:18 PM Changeset [2296] by Nicklas Nordborg
Fixes #247: Postgres needs a filter when the log() function is used …
9:52 AM Changeset [2295] by Nicklas Nordborg
Removed debug output
9:46 AM Changeset [2294] by Nicklas Nordborg
Added progress bar while loading overview plots
9:04 AM Changeset [2293] by Nicklas Nordborg
Fixes #253: Javascript error when clicking a transformation or …
9:04 AM Ticket #253 (Javascript error when clicking a transformation or bioassay set in ...) closed by Nicklas Nordborg
fixed: (In [2293]) Fixes #253: Javascript error when clicking a …
9:00 AM Ticket #257 (Fix the Jep.nodeToExpression method) created by Nicklas Nordborg
It contains a lot of instanceof operations. Maybe we should …
8:57 AM Changeset [2292] by Nicklas Nordborg
Added abs() and exp() functions to Query API and Jep parser. Added …
7:51 AM Changeset [2291] by Nicklas Nordborg
References #247: Postgres needs a filter when the log() function is …

May 18, 2006:

4:13 PM Ticket #246 (Postgres doesn't support column aliases in where or having clause) closed by Nicklas Nordborg
fixed: (In [2290]) Fixes #246: Postgres doesn't support column aliases in …
4:13 PM Changeset [2290] by Nicklas Nordborg
Fixes #246: Postgres doesn't support column aliases in where or having …
4:11 PM Ticket #256 (Filter updates to the Job.ProgressReporterImpl) created by Nicklas Nordborg
This progress reporter reportes progress from plugins to the database …
1:47 PM Changeset [2289] by Nicklas Nordborg
Quote table aliases in dynamic queries.
1:31 PM Ticket #255 (Plot function not working when accessed from bioassay set) closed by Nicklas Nordborg
fixed: (In [2288]) Fixes #255: Plot function not working when accessed from …
1:31 PM Changeset [2288] by Nicklas Nordborg
Fixes #255: Plot function not working when accessed from bioassay set …
1:07 PM Ticket #255 (Plot function not working when accessed from bioassay set) created by Nicklas Nordborg
It doesn't matter what you select to plot on the x- and y-axis. The …
12:31 PM Ticket #254 (Can't run an analysis plugin with Internet explorer) created by Nicklas Nordborg
Go to a bioassay set in an experiment. Click the "Run plugin" button. …
12:31 PM Changeset [2287] by Jari Häkkinen
Clarified information on BASE 1.2 database schema version when migrating.
12:23 PM Ticket #253 (Javascript error when clicking a transformation or bioassay set in ...) created by Nicklas Nordborg
Goto the "Bioassay sets" tab for an experiment and click on a …
12:14 PM Ticket #252 (Make the trashcan smarter when deleting items) created by Nicklas Nordborg
The trashcan now try to delete all items in one go, which means that …
12:00 PM Changeset [2286] by Nicklas Nordborg
Updated the "roles" test suite to follow the latest specifications.
11:59 AM Changeset [2285] by Nicklas Nordborg
Check for null progress reporter. Added child name parameter to lowess …
11:58 AM Ticket #251 (Row was updated or deleted by another transaction in trashcan) closed by Nicklas Nordborg
fixed: (In [2284]) Fixes #251: Row was updated or deleted by another …
11:58 AM Changeset [2284] by Nicklas Nordborg
Fixes #251: Row was updated or deleted by another transaction in …
11:47 AM Ticket #235 (Upload file gives JavaScript error in Internet Explorer) closed by Martin Svensson
fixed: (In [2283]) Fixes #235 Upload file gives JavaScript? error in Internet …
11:47 AM Changeset [2283] by Martin Svensson
Fixes #235 Upload file gives JavaScript? error in Internet Explorer
11:14 AM Ticket #243 (Set active button is not working in Internet Explorer) closed by Martin Svensson
fixed: (In [2282]) Fixes #243 Set active button is not working in Internet …
11:14 AM Changeset [2282] by Martin Svensson
Fixes #243 Set active button is not working in Internet Explorer
11:03 AM Ticket #251 (Row was updated or deleted by another transaction in trashcan) created by Nicklas Nordborg
Items mapped by cascade="delete" may result in exception when deleting …
9:54 AM Changeset [2281] by Nicklas Nordborg
Checking parameters in the run method.
9:53 AM Changeset [2280] by Nicklas Nordborg
Check that an Extendable class is known to Hibernate (otherwise it …
9:49 AM Changeset [2279] by Nicklas Nordborg
Added toString() to RawDataType?
9:48 AM Changeset [2278] by Nicklas Nordborg
Fixes #249: Guest doesn't have permission to create jobs
9:48 AM Ticket #249 (Guest doesn't have permission to create jobs) closed by Nicklas Nordborg
fixed: (In [2278]) Fixes #249: Guest doesn't have permission to create jobs
9:22 AM Ticket #250 (Biomaterial quantities are not updated when used) closed by Martin Svensson
fixed: This works on the latest build. Tested on build #2277.
8:33 AM Changeset [2277] by Martin Svensson
Fixes #245 Selected inherited annotations are not saved to database.
8:33 AM Ticket #245 (Selected inherited annotations are not saved to database.) closed by Martin Svensson
fixed: (In [2277]) Fixes #245 Selected inherited annotations are not saved to …
7:49 AM Ticket #250 (Biomaterial quantities are not updated when used) created by nicklas (mail from Longfei Yu <lyu@…
I just noticed one error in the BASE2 about the quantity. For …

May 17, 2006:

4:03 PM Ticket #249 (Guest doesn't have permission to create jobs) created by Nicklas Nordborg
Which means that they won't be able to participate in analysis of an …
2:28 PM Changeset [2276] by Nicklas Nordborg
Spill-over from current context is now filtered out from enumerated …
2:19 PM Changeset [2275] by Nicklas Nordborg
Added instructions for the analysis tests.
2:03 PM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) created by Nicklas Nordborg
A non-filter bioassay set is displaying ok. The SQL for loading the …
1:51 PM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) closed by Martin Svensson
fixed: (In [2274]) Fixes #238 JavaScript? error while saving a new item if one …
1:51 PM Changeset [2274] by Martin Svensson
Fixes #238 JavaScript? error while saving a new item if one has clicked …
12:26 PM Ticket #247 (Postgres needs a filter when the log() function is used) created by Nicklas Nordborg
In contrast to MySQL which ignores the log of negative values, …
12:23 PM Ticket #246 (Postgres doesn't support column aliases in where or having clause) created by Nicklas Nordborg
This is not considered in the Query API:s SelectedExpression? object …
11:31 AM Ticket #245 (Selected inherited annotations are not saved to database.) created by Martin Svensson
The selected inherited annotations are not saved in the following …
11:24 AM Changeset [2273] by Nicklas Nordborg
Fixed PermissionDeniedException? when creating a new bioassay set …
11:12 AM Ticket #240 (JavaScript error when importing raw data (Internet Explorer)) closed by Nicklas Nordborg
fixed: (In [2272]) Fixes #240: JavaScript? error when importing raw data …
11:12 AM Changeset [2272] by Nicklas Nordborg
Fixes #240: JavaScript? error when importing raw data (Internet Explorer)
10:58 AM Changeset [2271] by Nicklas Nordborg
Fixed rare problem causing an exception if a job has been started …
10:55 AM Tickets #234,​236,​244 batch updated by Nicklas Nordborg
fixed: (In [2270]) Fixes #234: Reporter map importer is missing settings …
10:55 AM Changeset [2270] by Nicklas Nordborg
Fixes #234: Reporter map importer is missing settings found in other …
10:33 AM Changeset [2269] by Nicklas Nordborg
Removed debug output.
9:11 AM Ticket #244 (Add support for meta coordinates in ReporterMapFlatFileImporter) created by Nicklas Nordborg
The current implementation only supports block, row, column coordinates.
8:52 AM Ticket #239 (PermissionDeniedException when creating images if not logged in as root) closed by Nicklas Nordborg
fixed: (In [2268]) Fixes #239: PermissionDeniedException? when creating images …
8:52 AM Changeset [2268] by Nicklas Nordborg
Fixes #239: PermissionDeniedException? when creating images if not …
8:50 AM Ticket #237 (Create button on Array LIMS - Array slides is not working in Internet ...) closed by Nicklas Nordborg
fixed: (In [2267]) Fixes #237: Create button on Array LIMS - Array slides is …
8:50 AM Changeset [2267] by Nicklas Nordborg
Fixes #237: Create button on Array LIMS - Array slides is not working …

May 16, 2006:

3:48 PM Changeset [2266] by Nicklas Nordborg
Changed default permissions for reporters and reporter types so that …
3:46 PM Changeset [2265] by Nicklas Nordborg
Fixed error message if directory is null.
3:46 PM Changeset [2264] by Nicklas Nordborg
Fixed NullPointerException? if a quota group had undefined quota values …
3:44 PM Changeset [2263] by Nicklas Nordborg
Fixes #233: Must have an index on the Features table with block, row …
3:44 PM Ticket #233 (Must have an index on the Features table with block, row and column) closed by Nicklas Nordborg
fixed: (In [2263]) Fixes #233: Must have an index on the Features table with …
3:44 PM Changeset [2262] by Nicklas Nordborg
Throws exception if mapped column is not found among headers
3:43 PM Changeset [2261] by Nicklas Nordborg
Added possibility to overwrite progress messages on the same line.
3:42 PM Changeset [2260] by Nicklas Nordborg
Better error reporting if invalid data is found Changed name to follow …
3:41 PM Changeset [2259] by Nicklas Nordborg
'Roles' test program updated to follow the latest instructions.
3:39 PM Changeset [2258] by Nicklas Nordborg
Updated test documentation
2:38 PM Ticket #243 (Set active button is not working in Internet Explorer) created by Nicklas Nordborg
Goto: View -> Projects Click on a project and then on the "Set …
2:33 PM Ticket #242 (Investigate if it would be better to preload features when importing ...) created by Nicklas Nordborg
We need the features for validating the raw data and connecting with …
12:15 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) created by Nicklas Nordborg
The File.isUsed() function return false, but you get a database …
11:43 AM Ticket #240 (JavaScript error when importing raw data (Internet Explorer)) created by Nicklas Nordborg
When importing raw data and selecting the raw bioassay parameter the …
11:32 AM Ticket #239 (PermissionDeniedException when creating images if not logged in as root) created by Nicklas Nordborg
If you are not logged in as root you will get a …
11:15 AM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) created by Nicklas Nordborg
Create a new biosource. Click on "Inherit annotations". Click on …
11:06 AM Ticket #237 (Create button on Array LIMS - Array slides is not working in Internet ...) created by Nicklas Nordborg
Clicking on the "Create..." button gives the following error: Rad: 80 …
11:01 AM Ticket #236 (Reporter map importer doesn't require an array design) created by Nicklas Nordborg
It must have an array design to be able to import features.
10:55 AM Ticket #235 (Upload file gives JavaScript error in Internet Explorer) created by Nicklas Nordborg
Rad: 65 Tecken: 1 Fel: Ett object förväntades But the upload function …
10:41 AM Ticket #234 (Reporter map importer is missing settings found in other importers) created by Nicklas Nordborg
For example, it has no min or max data columns. Missing settings …
8:57 AM Ticket #233 (Must have an index on the Features table with block, row and column) created by Nicklas Nordborg
Raw data import when an array design is connected is *very* slow …

May 15, 2006:

12:04 PM Changeset [2257] by Nicklas Nordborg
Fixed NullPointerException?
11:41 AM Changeset [2256] by Nicklas Nordborg
Fixes #232: Only root can list events for biomaterials
11:41 AM Ticket #232 (Only root can list events for biomaterials) closed by Nicklas Nordborg
fixed: (In [2256]) Fixes #232: Only root can list events for biomaterials
11:32 AM Changeset [2255] by Nicklas Nordborg
Fixed a PermissionDeniedException?
11:29 AM Changeset [2254] by Nicklas Nordborg
Fixes #230: Changing the used amount for the parent sample of an …
11:29 AM Ticket #230 (Changing the used amount for the parent sample of an extract is not ...) closed by Nicklas Nordborg
fixed: (In [2254]) Fixes #230: Changing the used amount for the parent sample …
9:35 AM Changeset [2253] by Nicklas Nordborg
Added test code for user role
9:31 AM Ticket #231 (Reporters -> New.. opens the form in the existing window and not in a ...) closed by Martin Svensson
fixed: (In [2252]) Fixes #231: Reporters -> New.. opens the form in the …
9:31 AM Changeset [2252] by Martin Svensson
Fixes #231: Reporters -> New.. opens the form in the existing window …
9:21 AM Ticket #232 (Only root can list events for biomaterials) created by Nicklas Nordborg
The query that returns BioMaterialEvent:s only returns items if the …
9:21 AM Ticket #231 (Reporters -> New.. opens the form in the existing window and not in a ...) created by Martin Svensson

May 12, 2006:

4:31 PM Changeset [2251] by Johan Enell
can create a serial basefile
4:28 PM Changeset [2250] by Johan Enell
added id to propetyToColumn map
10:37 AM Changeset [2249] by Nicklas Nordborg
Added first version of automated tests for roles. References #221 and #222.
10:26 AM Changeset [2248] by Nicklas Nordborg
Fixed exception when the generated MD5 starts with a digit.
9:32 AM Ticket #228 (Menus for File -> New -> XXX is linked to wrong JSP pages) closed by Martin Svensson
fixed: (In [2247]) Fixes #228. Menus for File -> New -> XXX is linked to …
9:32 AM Changeset [2247] by Martin Svensson
Fixes #228. Menus for File -> New -> XXX is linked to wrong JSP pages. …

May 11, 2006:

2:49 PM Changeset [2246] by Nicklas Nordborg
Fixed placement of buttons
2:49 PM Changeset [2245] by Nicklas Nordborg
Changed annotation type to biosource for one of the annotations
1:39 PM Changeset [2244] by Martin Svensson
Updated test procedure for USER
1:32 PM Ticket #230 (Changing the used amount for the parent sample of an extract is not ...) created by Nicklas Nordborg
A workaround is to remove the parent, save the extract and then re-add …
1:17 PM Ticket #229 (Can't log in using the encrypt password function when the password is ...) closed by Nicklas Nordborg
fixed: (In [2243]) Fixes #229: Can't log in using the encrypt password …
1:17 PM Changeset [2243] by Nicklas Nordborg
Fixes #229: Can't log in using the encrypt password function when the …
12:20 PM Ticket #229 (Can't log in using the encrypt password function when the password is ...) created by Nicklas Nordborg
Seems to be a problem in the core that removes leading 0:s from the …
12:03 PM Changeset [2242] by Nicklas Nordborg
Fixed bug in query for Postgres/MySQL
11:53 AM Changeset [2241] by Nicklas Nordborg
Fixes #226: PermissionDeniedException? when logging in for users that …
11:53 AM Ticket #226 (PermissionDeniedException when logging in for users that have been ...) closed by Nicklas Nordborg
fixed: (In [2241]) Fixes #226: PermissionDeniedException? when logging in for …
11:38 AM Changeset [2240] by Nicklas Nordborg
Fixes #227: PermissionDeniedException? when logging in if a user has …
11:38 AM Ticket #227 (PermissionDeniedException when logging in if a user has been assigned ...) closed by Nicklas Nordborg
fixed: (In [2240]) Fixes #227: PermissionDeniedException? when logging in if a …
11:14 AM Ticket #228 (Menus for File -> New -> XXX is linked to wrong JSP pages) created by nicklas (mail from Longfei Yu <at5863@…
When I added data to the BASE2 system, I got a very tricky problem. …
9:18 AM Ticket #227 (PermissionDeniedException when logging in if a user has been assigned ...) created by Nicklas Nordborg
9:14 AM Ticket #226 (PermissionDeniedException when logging in for users that have been ...) created by Nicklas Nordborg
The specifications say that a user gets read permission on the quota …
9:10 AM Changeset [2239] by Nicklas Nordborg
Fixes #223: Multiplicity should have a default value of 1 for new …
9:10 AM Ticket #223 (Multiplicity should have a default value of 1 for new annotation types) closed by Nicklas Nordborg
fixed: (In [2239]) Fixes #223: Multiplicity should have a default value of 1 …
9:08 AM Changeset [2238] by Nicklas Nordborg
Fixes #225: Power user doesn't have USE permission for protocol types …
9:08 AM Ticket #225 (Power user doesn't have USE permission for protocol types) closed by Nicklas Nordborg
fixed: (In [2238]) Fixes #225: Power user doesn't have USE permission for …
9:01 AM Changeset [2237] by Nicklas Nordborg
Fixes #224: Power user doesn't have access to …
9:01 AM Ticket #224 (Power user doesn't have access to Software/Hardware/Protocols menu items) closed by Nicklas Nordborg
fixed: (In [2237]) Fixes #224: Power user doesn't have access to …
8:32 AM Changeset [2236] by Nicklas Nordborg
Updated test procedures
8:21 AM Ticket #225 (Power user doesn't have USE permission for protocol types) created by Nicklas Nordborg
This is needed since, the power user has create permission for protocols.
8:20 AM Ticket #224 (Power user doesn't have access to Software/Hardware/Protocols menu items) created by Nicklas Nordborg
The power user has create permissio, but the mentioned menu items are …
8:17 AM Ticket #223 (Multiplicity should have a default value of 1 for new annotation types) created by Nicklas Nordborg
Now, it is empty which means unlimiteed number of annotations.
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