#278 closed defect (worksforme)
Trying to create a new plate.
| Reported by: | Owned by: | Nicklas Nordborg | |
|---|---|---|---|
| Priority: | trivial | Milestone: | BASE 2.1 |
| Component: | core | Version: | |
| Keywords: | Cc: |
Description
I'd previously created a dummy plate geometry and plate type, and upon trying to instantiate a plate from my dummy plate type, the server took a very long time to process the save request. I hit refresh in impatience (I'd waited 3-5 minutes), and after selecting the geometry again I hit save. It waited a few minutes, then crashed.
Change History (5)
comment:1 Changed 17 years ago by
comment:2 Changed 17 years ago by
| Milestone: | → BASE 2.0+ |
|---|---|
| Priority: | major → trivial |
The original exception is a java.lang.OutOfMemoryError?. This would probably happen if the plate geometry has many rows and or columns. The assumption during the code design has been that these numbers are relatively small, 8x12, 16x24, etc. But the numbers entered for the plate geometry are never checked and if someone enters very large numbers all memory could be used as we try to create the well objects for the plate.
comment:3 Changed 17 years ago by
| Component: | web → core |
|---|---|
| Owner: | changed from Johan Enell to Nicklas Nordborg |
This should be handled in some way to avoid the virtual maschine to crash.
- Limitation in geometry size.
- Catch the OutOfMemoryEception?.
comment:4 Changed 17 years ago by
| Resolution: | → worksforme |
|---|---|
| Status: | new → closed |
comment:5 Changed 17 years ago by
| Milestone: | BASE 2.x+ → BASE 2.1 |
|---|
Further information from this error:
Base version 2.0 (build #2353; schema #6) Web server Apache Tomcat/5.5.17 Database Dialect org.hibernate.dialect.MySQLInnoDBDialect JDBC Driver com.mysql.jdbc.Driver Browser Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv:1.8.0.4) Gecko/20060508 Firefox/1.5.0.4 Error message InvocationTargetException? preparing statement capable of returning generated keys (JDBC3) Stack trace
...at org.hibernate.util.GetGeneratedKeysHelper?.prepareStatement(GetGeneratedKeysHelper?.java:55) ...at org.hibernate.jdbc.AbstractBatcher?.getPreparedStatement(AbstractBatcher?.java:435) ...at org.hibernate.jdbc.AbstractBatcher?.prepareStatement(AbstractBatcher?.java:93) ...at org.hibernate.persister.entity.AbstractEntityPersister?.insert(AbstractEntityPersister?.java:1948)
...at org.hibernate.persister.entity.AbstractEntityPersister?.insert(AbstractEntityPersister?.java:2405) ...at org.hibernate.action.EntityIdentityInsertAction?.execute(EntityIdentityInsertAction?.java:37) ...at org.hibernate.engine.ActionQueue?.execute(ActionQueue?.java:243) ...at org.hibernate.event.def.AbstractSaveEventListener?.performSaveOrReplicate(AbstractSaveEventListener?.java:269) ...at org.hibernate.event.def.AbstractSaveEventListener?.performSave(AbstractSaveEventListener?.java:167) ...at org.hibernate.event.def.AbstractSaveEventListener?.saveWithGeneratedId(AbstractSaveEventListener?.java:101) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener?.java:186) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.entityIsTransient(DefaultSaveOrUpdateEventListener?.java:175) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.performSaveOrUpdate(DefaultSaveOrUpdateEventListener?.java:98) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.onSaveOrUpdate(DefaultSaveOrUpdateEventListener?.java:70) ...at org.hibernate.impl.SessionImpl?.fireSaveOrUpdate(SessionImpl?.java:531) ...at org.hibernate.impl.SessionImpl?.saveOrUpdate(SessionImpl?.java:523) ...at org.hibernate.engine.CascadingAction?$1.cascade(CascadingAction?.java:134) ...at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:213) ...at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:157) ...at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:108) ...at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:290) ...at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:185) ...at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:160) ...at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:108) ...at org.hibernate.engine.Cascade.cascade(Cascade.java:248) ...at org.hibernate.event.def.AbstractSaveEventListener?.cascadeAfterSave(AbstractSaveEventListener?.java:410) ...at org.hibernate.event.def.AbstractSaveEventListener?.performSaveOrReplicate(AbstractSaveEventListener?.java:299) ...at org.hibernate.event.def.AbstractSaveEventListener?.performSave(AbstractSaveEventListener?.java:167) ...at org.hibernate.event.def.AbstractSaveEventListener?.saveWithGeneratedId(AbstractSaveEventListener?.java:101) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener?.java:186) ...at org.hibernate.event.def.DefaultSaveEventListener?.saveWithGeneratedOrRequestedId(DefaultSaveEventListener?.java:33) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.entityIsTransient(DefaultSaveOrUpdateEventListener?.java:175) ...at org.hibernate.event.def.DefaultSaveEventListener?.performSaveOrUpdate(DefaultSaveEventListener?.java:27) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.onSaveOrUpdate(DefaultSaveOrUpdateEventListener?.java:70) ...at org.hibernate.impl.SessionImpl?.fireSave(SessionImpl?.java:559) ...at org.hibernate.impl.SessionImpl?.save(SessionImpl?.java:547) ...at org.hibernate.impl.SessionImpl?.save(SessionImpl?.java:543) ...at HibernateUtil?.saveData(HibernateUtil?.java:944) ...at DbControl?.commit(DbControl?.java:334) ...at org.apache.jsp.lims.plates.index_jsp._jspService(index_jsp.java:168) ...at org.apache.jasper.runtime.HttpJspBase?.service(HttpJspBase?.java:97) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.jasper.servlet.JspServletWrapper?.service(JspServletWrapper?.java:332) ...at org.apache.jasper.servlet.JspServlet?.serviceJspFile(JspServlet?.java:314) ...at org.apache.jasper.servlet.JspServlet?.service(JspServlet?.java:264) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:252) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter?.doFilter(CharacterEncodingFilter?.java:71) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:202) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at org.apache.catalina.core.StandardWrapperValve?.invoke(StandardWrapperValve?.java:213) ...at org.apache.catalina.core.StandardContextValve?.invoke(StandardContextValve?.java:178) ...at org.apache.catalina.core.StandardHostValve?.invoke(StandardHostValve?.java:126) ...at org.apache.catalina.valves.ErrorReportValve?.invoke(ErrorReportValve?.java:105) ...at org.apache.catalina.core.StandardEngineValve?.invoke(StandardEngineValve?.java:107) ...at org.apache.catalina.connector.CoyoteAdapter?.service(CoyoteAdapter?.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) ...at org.apache.tomcat.util.net.PoolTcpEndpoint?.processSocket(PoolTcpEndpoint?.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread?.runIt(LeaderFollowerWorkerThread?.java:80) ...at org.apache.tomcat.util.threads.ThreadPool?$ControlRunnable?.run(ThreadPool?.java:684) ...at java.lang.Thread.run(Thread.java:595)
Caused by: java.lang.reflect.InvocationTargetException? ...at sun.reflect.GeneratedMethodAccessor61.invoke(Unknown Source) ...at sun.reflect.DelegatingMethodAccessorImpl?.invoke(DelegatingMethodAccessorImpl?.java:25) ...at java.lang.reflect.Method.invoke(Method.java:585) ...at org.hibernate.util.GetGeneratedKeysHelper?.prepareStatement(GetGeneratedKeysHelper?.java:45) ...at org.hibernate.jdbc.AbstractBatcher?.getPreparedStatement(AbstractBatcher?.java:435) ...at org.hibernate.jdbc.AbstractBatcher?.prepareStatement(AbstractBatcher?.java:93) ...at org.hibernate.persister.entity.AbstractEntityPersister?.insert(AbstractEntityPersister?.java:1948) ...at org.hibernate.persister.entity.AbstractEntityPersister?.insert(AbstractEntityPersister?.java:2405) ...at org.hibernate.action.EntityIdentityInsertAction?.execute(EntityIdentityInsertAction?.java:37) ...at org.hibernate.engine.ActionQueue?.execute(ActionQueue?.java:243) ...at org.hibernate.event.def.AbstractSaveEventListener?.performSaveOrReplicate(AbstractSaveEventListener?.java:269) ...at org.hibernate.event.def.AbstractSaveEventListener?.performSave(AbstractSaveEventListener?.java:167) ...at org.hibernate.event.def.AbstractSaveEventListener?.saveWithGeneratedId(AbstractSaveEventListener?.java:101) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener?.java:186) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.entityIsTransient(DefaultSaveOrUpdateEventListener?.java:175) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.performSaveOrUpdate(DefaultSaveOrUpdateEventListener?.java:98) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.onSaveOrUpdate(DefaultSaveOrUpdateEventListener?.java:70) ...at org.hibernate.impl.SessionImpl?.fireSaveOrUpdate(SessionImpl?.java:531) ...at org.hibernate.impl.SessionImpl?.saveOrUpdate(SessionImpl?.java:523) ...at org.hibernate.engine.CascadingAction?$1.cascade(CascadingAction?.java:134) ...at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:213) ...at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:157) ...at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:108) ...at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:290) ...at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:185) ...at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:160) ...at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:108) ...at org.hibernate.engine.Cascade.cascade(Cascade.java:248) ...at org.hibernate.event.def.AbstractSaveEventListener?.cascadeAfterSave(AbstractSaveEventListener?.java:410) ...at org.hibernate.event.def.AbstractSaveEventListener?.performSaveOrReplicate(AbstractSaveEventListener?.java:299) ...at org.hibernate.event.def.AbstractSaveEventListener?.performSave(AbstractSaveEventListener?.java:167) ...at org.hibernate.event.def.AbstractSaveEventListener?.saveWithGeneratedId(AbstractSaveEventListener?.java:101) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener?.java:186) ...at org.hibernate.event.def.DefaultSaveEventListener?.saveWithGeneratedOrRequestedId(DefaultSaveEventListener?.java:33) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.entityIsTransient(DefaultSaveOrUpdateEventListener?.java:175) ...at org.hibernate.event.def.DefaultSaveEventListener?.performSaveOrUpdate(DefaultSaveEventListener?.java:27) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener?.onSaveOrUpdate(DefaultSaveOrUpdateEventListener?.java:70) ...at org.hibernate.impl.SessionImpl?.fireSave(SessionImpl?.java:559) ...at org.hibernate.impl.SessionImpl?.save(SessionImpl?.java:547) ...at org.hibernate.impl.SessionImpl?.save(SessionImpl?.java:543) ...at HibernateUtil?.saveData(HibernateUtil?.java:944) ...at DbControl?.commit(DbControl?.java:334) ...at org.apache.jsp.lims.plates.index_jsp._jspService(index_jsp.java:168) ...at org.apache.jasper.runtime.HttpJspBase?.service(HttpJspBase?.java:97) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.jasper.servlet.JspServletWrapper?.service(JspServletWrapper?.java:332) ...at org.apache.jasper.servlet.JspServlet?.serviceJspFile(JspServlet?.java:314) ...at org.apache.jasper.servlet.JspServlet?.service(JspServlet?.java:264) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:252) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter?.doFilter(CharacterEncodingFilter?.java:71) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:202) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at org.apache.catalina.core.StandardWrapperValve?.invoke(StandardWrapperValve?.java:213) ...at org.apache.catalina.core.StandardContextValve?.invoke(StandardContextValve?.java:178) ...at org.apache.catalina.core.StandardHostValve?.invoke(StandardHostValve?.java:126) ...at org.apache.catalina.valves.ErrorReportValve?.invoke(ErrorReportValve?.java:105) ...at org.apache.catalina.core.StandardEngineValve?.invoke(StandardEngineValve?.java:107) ...at org.apache.catalina.connector.CoyoteAdapter?.service(CoyoteAdapter?.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) ...at org.apache.tomcat.util.net.PoolTcpEndpoint?.processSocket(PoolTcpEndpoint?.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread?.runIt(LeaderFollowerWorkerThread?.java:80) ...at org.apache.tomcat.util.threads.ThreadPool?$ControlRunnable?.run(ThreadPool?.java:684) ...at java.lang.Thread.run(Thread.java:595)
Caused by: java.lang.OutOfMemoryError?