#278 closed defect (worksforme)
Trying to create a new plate.
| Reported by: | Owned by: | Nicklas Nordborg | |
|---|---|---|---|
| Priority: | trivial | Milestone: | BASE 2.1 |
| Component: | core | Version: | |
| Keywords: | Cc: |
Description
I'd previously created a dummy plate geometry and plate type, and upon trying to instantiate a plate from my dummy plate type, the server took a very long time to process the save request. I hit refresh in impatience (I'd waited 3-5 minutes), and after selecting the geometry again I hit save. It waited a few minutes, then crashed.
Change History (5)
comment:1 by , 18 years ago
comment:2 by , 18 years ago
| Milestone: | → BASE 2.0+ |
|---|---|
| Priority: | major → trivial |
The original exception is a java.lang.OutOfMemoryError. This would probably happen if the plate geometry has many rows and or columns. The assumption during the code design has been that these numbers are relatively small, 8x12, 16x24, etc. But the numbers entered for the plate geometry are never checked and if someone enters very large numbers all memory could be used as we try to create the well objects for the plate.
comment:3 by , 18 years ago
| Component: | web → core |
|---|---|
| Owner: | changed from to |
This should be handled in some way to avoid the virtual maschine to crash.
- Limitation in geometry size.
- Catch the OutOfMemoryEception.
comment:4 by , 18 years ago
| Resolution: | → worksforme |
|---|---|
| Status: | new → closed |
comment:5 by , 18 years ago
| Milestone: | BASE 2.x+ → BASE 2.1 |
|---|
Further information from this error:
Base version 2.0 (build #2353; schema #6) Web server Apache Tomcat/5.5.17 Database Dialect org.hibernate.dialect.MySQLInnoDBDialect JDBC Driver com.mysql.jdbc.Driver Browser Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv:1.8.0.4) Gecko/20060508 Firefox/1.5.0.4 Error message InvocationTargetException preparing statement capable of returning generated keys (JDBC3) Stack trace
...at org.hibernate.util.GetGeneratedKeysHelper.prepareStatement(GetGeneratedKeysHelper.java:55) ...at org.hibernate.jdbc.AbstractBatcher.getPreparedStatement(AbstractBatcher.java:435) ...at org.hibernate.jdbc.AbstractBatcher.prepareStatement(AbstractBatcher.java:93) ...at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:1948)
...at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:2405) ...at org.hibernate.action.EntityIdentityInsertAction.execute(EntityIdentityInsertAction.java:37) ...at org.hibernate.engine.ActionQueue.execute(ActionQueue.java:243) ...at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:269) ...at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:167) ...at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:101) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener.java:186) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.entityIsTransient(DefaultSaveOrUpdateEventListener.java:175) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:98) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:70) ...at org.hibernate.impl.SessionImpl.fireSaveOrUpdate(SessionImpl.java:531) ...at org.hibernate.impl.SessionImpl.saveOrUpdate(SessionImpl.java:523) ...at org.hibernate.engine.CascadingAction$1.cascade(CascadingAction.java:134) ...at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:213) ...at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:157) ...at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:108) ...at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:290) ...at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:185) ...at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:160) ...at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:108) ...at org.hibernate.engine.Cascade.cascade(Cascade.java:248) ...at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:410) ...at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:299) ...at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:167) ...at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:101) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener.java:186) ...at org.hibernate.event.def.DefaultSaveEventListener.saveWithGeneratedOrRequestedId(DefaultSaveEventListener.java:33) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.entityIsTransient(DefaultSaveOrUpdateEventListener.java:175) ...at org.hibernate.event.def.DefaultSaveEventListener.performSaveOrUpdate(DefaultSaveEventListener.java:27) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:70) ...at org.hibernate.impl.SessionImpl.fireSave(SessionImpl.java:559) ...at org.hibernate.impl.SessionImpl.save(SessionImpl.java:547) ...at org.hibernate.impl.SessionImpl.save(SessionImpl.java:543) ...at HibernateUtil.saveData(HibernateUtil.java:944) ...at DbControl.commit(DbControl.java:334) ...at org.apache.jsp.lims.plates.index_jsp._jspService(index_jsp.java:168) ...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:332) ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314) ...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:264) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:71) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) ...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) ...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) ...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) ...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) ...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) ...at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80) ...at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) ...at java.lang.Thread.run(Thread.java:595)
Caused by: java.lang.reflect.InvocationTargetException ...at sun.reflect.GeneratedMethodAccessor61.invoke(Unknown Source) ...at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) ...at java.lang.reflect.Method.invoke(Method.java:585) ...at org.hibernate.util.GetGeneratedKeysHelper.prepareStatement(GetGeneratedKeysHelper.java:45) ...at org.hibernate.jdbc.AbstractBatcher.getPreparedStatement(AbstractBatcher.java:435) ...at org.hibernate.jdbc.AbstractBatcher.prepareStatement(AbstractBatcher.java:93) ...at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:1948) ...at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:2405) ...at org.hibernate.action.EntityIdentityInsertAction.execute(EntityIdentityInsertAction.java:37) ...at org.hibernate.engine.ActionQueue.execute(ActionQueue.java:243) ...at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:269) ...at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:167) ...at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:101) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener.java:186) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.entityIsTransient(DefaultSaveOrUpdateEventListener.java:175) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:98) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:70) ...at org.hibernate.impl.SessionImpl.fireSaveOrUpdate(SessionImpl.java:531) ...at org.hibernate.impl.SessionImpl.saveOrUpdate(SessionImpl.java:523) ...at org.hibernate.engine.CascadingAction$1.cascade(CascadingAction.java:134) ...at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:213) ...at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:157) ...at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:108) ...at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:290) ...at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:185) ...at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:160) ...at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:108) ...at org.hibernate.engine.Cascade.cascade(Cascade.java:248) ...at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:410) ...at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:299) ...at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:167) ...at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:101) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener.java:186) ...at org.hibernate.event.def.DefaultSaveEventListener.saveWithGeneratedOrRequestedId(DefaultSaveEventListener.java:33) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.entityIsTransient(DefaultSaveOrUpdateEventListener.java:175) ...at org.hibernate.event.def.DefaultSaveEventListener.performSaveOrUpdate(DefaultSaveEventListener.java:27) ...at org.hibernate.event.def.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:70) ...at org.hibernate.impl.SessionImpl.fireSave(SessionImpl.java:559) ...at org.hibernate.impl.SessionImpl.save(SessionImpl.java:547) ...at org.hibernate.impl.SessionImpl.save(SessionImpl.java:543) ...at HibernateUtil.saveData(HibernateUtil.java:944) ...at DbControl.commit(DbControl.java:334) ...at org.apache.jsp.lims.plates.index_jsp._jspService(index_jsp.java:168) ...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:332) ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314) ...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:264) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:71) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) ...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) ...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) ...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) ...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) ...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) ...at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80) ...at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) ...at java.lang.Thread.run(Thread.java:595)
Caused by: java.lang.OutOfMemoryError