Package net.sf.basedb.util.listable

Class AbstractSourceItemTransformer

java.lang.Object

net.sf.basedb.util.listable.AbstractSourceItemTransformer

All Implemented Interfaces:

SourceItemTransformer

Direct Known Subclasses:

BioSourceToSampleTransformer, CollectedExtractsToDerivedBioAssayTransformer, CollectedExtractsToRawBioAssayTransformer, CollectExtracts.CollectChildren, CollectExtracts.CollectFromDerivedBioAssays, CollectExtracts.CollectFromExtracts, CollectExtracts.CollectFromRawBioAssays, CollectExtracts.CollectParents, CollectExtracts.ResetCollected, DerivedBioAssayToChildDerivedBioAssayTransformer, DerivedBioAssayToParentDerivedBioAssayTransformer, DerivedBioAssayToPhysicalBioAssayTransformer, DerivedBioAssayToRawBioAssayTransformer, ExtractToChildExtractTransformer, ExtractToParentExtractTransformer, ExtractToPhysicalBioAssayTransformer, ExtractToSampleTransformer, PhysicalBioAssayToDerivedBioAssayTransformer, PhysicalBioAssayToExtractTransformer, RawBioAssayToDerivedBioAssayTransformer, RestrictionTransformer, SampleToBioSourceTransformer, SampleToChildSampleTransformer, SampleToExtractTransformer, SampleToParentSampleTransformer

public abstract class AbstractSourceItemTransformer
extends Object
implements SourceItemTransformer

Abstract base class for source item transformers that can be useful for implementing some common functionality.

Since:

3.5

Author:

Nicklas

Field Summary

Fields

Modifier and Type	Field	Description
private final Item	source
private final Item	target

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AbstractSourceItemTransformer(Item source, Item target)	Create a new instance that transforms between the given source and target item types.

Method Summary

Modifier and Type	Method	Description
Item	getSourceItemType()	Get the item type of the source items.
Item	getTargetItemType()	Get the item type of the target items.
protected Set<Integer>	safeIdList(DbControl dc, ItemQuery<?> query, String parameterName, Set<Integer> values)	Safely execute the query even if the number of values in the 'values' set is higher than DbEngine.getMaxParametersInQuery().

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.sf.basedb.util.listable.SourceItemTransformer

transform

Field Details

source

private final Item source

target

private final Item target

Constructor Details

AbstractSourceItemTransformer

protected AbstractSourceItemTransformer(Item source,
 Item target)

Create a new instance that transforms between the given source and target item types.

Method Details

getSourceItemType

public Item getSourceItemType()

Description copied from interface: SourceItemTransformer

Get the item type of the source items.

Specified by:

getSourceItemType in interface SourceItemTransformer

getTargetItemType

public Item getTargetItemType()

Description copied from interface: SourceItemTransformer

Get the item type of the target items.

Specified by:

getTargetItemType in interface SourceItemTransformer

safeIdList

protected Set<Integer> safeIdList(DbControl dc,
 ItemQuery<?> query,
 String parameterName,
 Set<Integer> values)

Safely execute the query even if the number of values in the 'values' set is higher than DbEngine.getMaxParametersInQuery(). In this case, the values will be divided into subsets and the result of the query is merged in memory. It is important that the query is such that executing it multiple times with different subsets return the same result as if it was only executed a single time with the complete set.

Parameters:

query - The query to execut

parameterName - The name of the parameter to set for the values

values - The values to use in the query

Returns:

The result of the query.idList() method