Package net.sf.basedb.util.listable

Class ExtractToParentExtractTransformer

java.lang.Object

net.sf.basedb.util.listable.AbstractSourceItemTransformer

net.sf.basedb.util.listable.ExtractToParentExtractTransformer

All Implemented Interfaces:

SourceItemTransformer

public class ExtractToParentExtractTransformer
extends AbstractSourceItemTransformer

Source item transformer implementation that transform extract items to their parent extract items. From the given set of extract ID:s the transformer will recursively load as many parent extracts as possible. The source items may optionally be included in the target set.

Since:

3.5

Author:

Nicklas

Field Summary

Fields

Modifier and Type	Field	Description
private CollectExtracts	collectedExtracts
private final boolean	includeSourcesInTarget
private boolean	pushOnly

Constructor Summary

Constructors

Constructor	Description
ExtractToParentExtractTransformer(boolean includeSourcesInTarget)	Create a new extract to parent extract transformer.
ExtractToParentExtractTransformer(boolean includeSourcesInTarget, boolean childrensThatPushOnly)	Create a new extract to parent extract transformer that only load parents to extracts that has a subtype with "push annotations" set.
ExtractToParentExtractTransformer(boolean includeSourcesInTarget, CollectExtracts collectedExtracts)	Create a new extract to parent extract transformer that is considering extracts collected on downstream derived and raw bioassays.

Method Summary

Modifier and Type	Method	Description
Set<Integer>	transform(TransformContext context, Set<Integer> source)	Transform the given set of source item ID:s into a set of target item ID:s

Methods inherited from class net.sf.basedb.util.listable.AbstractSourceItemTransformer

getSourceItemType, getTargetItemType, safeIdList

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

includeSourcesInTarget

private final boolean includeSourcesInTarget

collectedExtracts

private CollectExtracts collectedExtracts

pushOnly

private boolean pushOnly

Constructor Details

ExtractToParentExtractTransformer

public ExtractToParentExtractTransformer(boolean includeSourcesInTarget)

Create a new extract to parent extract transformer.

Parameters:

includeSourcesInTarget - TRUE to include the source items in the target

ExtractToParentExtractTransformer

public ExtractToParentExtractTransformer(boolean includeSourcesInTarget,
 boolean childrensThatPushOnly)

Create a new extract to parent extract transformer that only load parents to extracts that has a subtype with "push annotations" set. This functionality should only be used in the first transformation step.

Since:

3.16

See Also:

• PushToParentsTransformer

ExtractToParentExtractTransformer

public ExtractToParentExtractTransformer(boolean includeSourcesInTarget,
 CollectExtracts collectedExtracts)

Create a new extract to parent extract transformer that is considering extracts collected on downstream derived and raw bioassays.

Parameters:

includeSourcesInTarget - TRUE to include the source items in the target

collectedExtracts - Information about extracts found on downstream derived and raw bioassays

Method Details

transform

public Set<Integer> transform(TransformContext context,
 Set<Integer> source)

Description copied from interface: SourceItemTransformer

Transform the given set of source item ID:s into a set of target item ID:s