Package net.sf.basedb.util.listable

Class BioSourceToSampleTransformer

java.lang.Object

net.sf.basedb.util.listable.AbstractSourceItemTransformer

net.sf.basedb.util.listable.BioSourceToSampleTransformer

All Implemented Interfaces:

SourceItemTransformer

public class BioSourceToSampleTransformer
extends AbstractSourceItemTransformer

Source item transformer that transform biosource items to their child samples. This implementation will only transform to the biosource:s immediate child samples. Grandchildren are not included. To do this, combine this transformed with a SampleToChildSampleTransformer.

Since:

3.5

Author:

Nicklas

Constructor Summary

Constructors

Constructor	Description
BioSourceToSampleTransformer()

Method Summary

Modifier and Type	Method	Description
Set<Integer>	transform(TransformContext context, Set<Integer> source)	Load the ID of all samples that are immediate children to the given set of biosources.

Methods inherited from class net.sf.basedb.util.listable.AbstractSourceItemTransformer

getSourceItemType, getTargetItemType, safeIdList

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BioSourceToSampleTransformer

public BioSourceToSampleTransformer()

Method Details

transform

public Set<Integer> transform(TransformContext context,
 Set<Integer> source)

Load the ID of all samples that are immediate children to the given set of biosources.