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Interface Summary
Interface
Description
AssayField
Represents a bioassay field that is going to be exported.
DynamicField
Represents a spot or reporter field that is going to be exported
from a bioassay set.
ExportableField
Interface that represents an exportable field.
ExportableFieldConverter
Defines method for converting a string representation to
an exportable assay or dynamic field that can be used with
AbstractBioAssaySetExporter
implementations.
Class Summary
Class
Description
AbstractBioAssaySetExporter
An abstract superclass for all exporters that exports spot data from
a bioassay set.
AbstractFieldConverter
AdvancedFieldConverter
Field converter implementation that gives more detailed control how
fields are converted and used in the export.
AnnotationAssayField
Assay field implementation that exports the annotations of a
bioassay.
AssayPropertyField
Assay field implementation that exports a named property
from a bioassay.
Base1FieldConverter
Exportable field converter that support BASE 1 naming conventions.
BaseFileExporter
A superclass for exporters that exports spot data to BASEfile format.
BfsExporter
Base class for exporting spotdata to BFS format.
ExportableFieldFactory
Utility class with factory methods that helps with the creation
of exportable fields.
ExportableFieldFormatter
Formatter implementation that formats an exportable field
by returning the column title.
JepDynamicField
A dynamic field implementation that uses a JEP expression to
generate the expression that is needed to select the data.
MatrixBaseFileExporter
Exporter implementation that exports bioassay set data as a matrix
BASEfile.
MatrixBfsExporter
BFS exporter implementation that exports spot data in matrix format.
SerialBaseFileExporter
Exporter implementation that exports bioassay set data as a serial
BASEfile.
SerialBfsExporter
BFS exporter implementation that exports spot data in serial format.
SimpleDynamicField
Represents an exported data field.
StandardFieldConverter
Default field converter implementation that works mainly by
checking names and/or external id values of formulas, extra
values, experimental factors etc.