Class SerialBfsExporter

public class SerialBfsExporter
extends BfsExporter
BFS exporter implementation that exports spot data in serial format. This format creates one file per assay in the bioassay set. Each data file contains columns for the registered spot fields. For example, the 'sdata1' file contains channel 1 and 2 intensity for the first assay, and 'sdata2' contains the same data for the second assay, etc.
Last modified
$Date: 2010-04-20 10:02:16 +0200 (ti, 20 apr 2010) $
  • Field Details

  • Constructor Details

    • SerialBfsExporter

      public SerialBfsExporter()
      Create a new serial BFS exporter.
  • Method Details

    • getBFSSubtype

      public String getBFSSubtype()
      Description copied from class: BfsExporter
      Get the BFS subtype. This method may be overridden by subclasses. The default implementation returns null. The subtype is written to the metadata file: MetadataWriter.setSubtype(String).
      getBFSSubtype in class BfsExporter
    • createDataWriters

      protected List<DataWriter> createDataWriters() throws IOException
      Create one data writer for each assay in the bioassay set. Each data writer is configured with one column per spot field.
      Specified by:
      createDataWriters in class BfsExporter
      A list with data writers
      IOException - If there is a problem with creating the writers
    • arrangeData

      protected void arrangeData​(int position, short column, Object[][] data, Object[] spotData)
      The column number is used to find the assay index. Then, the spot data is copied to the correct data writer.
      Specified by:
      arrangeData in class BfsExporter
      position - The current position of the spot data
      column - The current column of the spot data
      data - The data array to copy the data to
      spotData - The current row of spot data, in the same order as BfsExporter.getSpotFields()