Package net.sf.basedb.core.data

Class BioPlateData

java.lang.Object
net.sf.basedb.core.data.BasicData
net.sf.basedb.core.data.OwnedData
net.sf.basedb.core.data.SharedData
net.sf.basedb.core.data.CommonData
net.sf.basedb.core.data.AnnotatedData
net.sf.basedb.core.data.BioPlateData
All Implemented Interfaces:
AnnotatableData, IdentifiableData, LoggableData, NameableData, OwnableData, RegisteredData, RemovableData, ShareableData
public class BioPlateData extends AnnotatedData implements RegisteredData
This class holds information about a bioplate
Version:
2.10
Author:
martin
See Also:
Last modified
$Date: 2008-11-27 16:33:55 +0100 (Thu, 27 Nov 2008) $
Hibernate: class
table="`BioPlates`" lazy="false"

  • Field Details

  • Constructor Details

    • BioPlateData

      public BioPlateData()

  • Method Details

    • getEntryDate

      public Date getEntryDate()
      Description copied from interface: RegisteredData
      Get the date this item was added to the database. The value is generated at creation time and can't be modified later.
      Specified by:
      getEntryDate in interface RegisteredData
      Since:
      3.1

    • setEntryDate

      public void setEntryDate(Date entryDate)

    • getExternalId

      public String getExternalId()
      Get the external id for the biomaterial
      Hibernate: property
      column="`external_id`" type="string" length="255" not-null="false"

    • setExternalId

      public void setExternalId(String externalId)

    • getBarcode

      public String getBarcode()
      Get the barcode for the bioplate. It is not required and doesn't have to be unique.
      Hibernate: property
      column="`barcode`" type="string" length="255" not-null="false"

    • setBarcode

      public void setBarcode(String barcode)

    • isDestroyed

      public boolean isDestroyed()
      If the plate has been destroyed.
      Since:
      2.16
      Hibernate: property
      column="`destroyed`" type="boolean" not-null="true"

    • setDestroyed

      public void setDestroyed(boolean destroyed)

    • getEventDate

      public Date getEventDate()
      Get the date this plate was created in the lab.
      Since:
      3.1
      Hibernate: property
      column="`event_date`" type="date" not-null="false"

    • setEventDate

      public void setEventDate(Date eventDate)

    • getPlateGeometry

      public PlateGeometryData getPlateGeometry()
      The geometry of this plate type.
      Hibernate: many-to-one
      column="`plategeometry_id`" not-null="true" outer-join="false" update="false"

    • setPlateGeometry

      public void setPlateGeometry(PlateGeometryData plateGeometry)

    • getFreezer

      public HardwareData getFreezer()
      Get the hardware, ie. freezer where the plate is kept. NOTE! Since BASE 3.2 we use the term "storage location" instead, but for backwards compatibility we can't change method names in the API.
      Hibernate: many-to-one
      column="`hardware_id`" not-null="false" outer-join="false"

    • setFreezer

      public void setFreezer(HardwareData freezer)

    • getSection

      public String getSection()
      Get the section in the storage location were the bioplate is stored.
      Since:
      3.2
      Hibernate: property
      column="`section`" type="string" length="255" not-null="false"

    • setSection

      public void setSection(String section)

    • getTray

      public String getTray()
      Get the tray in the storage location were the bioplate is stored.
      Since:
      3.2
      Hibernate: property
      column="`tray`" type="string" length="255" not-null="false"

    • setTray

      public void setTray(String tray)

    • getPosition

      public String getPosition()
      Get the position in the storage location were the bioplate is stored.
      Since:
      3.2
      Hibernate: property
      column="`position`" type="string" length="255" not-null="false"

    • setPosition

      public void setPosition(String position)

    • getBioPlateType

      public BioPlateTypeData getBioPlateType()
      Get the type of the bioplate.
      Since:
      2.16
      Hibernate: many-to-one
      column="`bioplatetype_id`" not-null="true" outer-join="false" update="false"

    • setBioPlateType

      public void setBioPlateType(BioPlateTypeData bioPlateType)
      Since:
      2.16

    • getFreeWells

      public int getFreeWells()
      Get the number of wells that are free on the bioplate.
      Since:
      2.17
      Hibernate: property
      column="`free_wells`" type="int" not-null="true"

    • setFreeWells

      public void setFreeWells(int freeWells)

    • updateFreeWells

      public void updateFreeWells(int diff)
      Update the number of free wells with the given difference
      Since:
      2.17

    • getBioWells

      public Map<PlateCoordinate,BioWellData> getBioWells()
      The wells on this plate. This is the inverse end.
      See Also:
      Hibernate: map
      lazy="true" inverse="true" cascade="all"
      Hibernate: collection-key
      column="`bioplate_id`"
      Hibernate: collection-composite-index
      class="net.sf.basedb.core.data.PlateCoordinate"
      Hibernate: collection-one-to-many
      class="net.sf.basedb.core.data.BioWellData"

    • setBioWells

      void setBioWells(Map<PlateCoordinate,BioWellData> bioWells)

    • getEventParticipants

      Set<BioPlateEventParticipantData> getEventParticipants()
      This is the inverse end.
      Since:
      2.17
      See Also:
      Hibernate: set
      lazy="true" inverse="true" cascade="delete"
      Hibernate: collection-key
      column="`bioplate_id`"
      Hibernate: collection-one-to-many
      class="net.sf.basedb.core.data.BioPlateEventParticipantData"

    • setEventParticipants

      void setEventParticipants(Set<BioPlateEventParticipantData> eventParticipants)