Package net.sf.basedb.util

Class IntensityCalculatorUtil.JepIntensityCalculatorImpl

java.lang.Object

net.sf.basedb.util.IntensityCalculatorUtil.JepIntensityCalculatorImpl

All Implemented Interfaces:

IntensityCalculator

Enclosing class:

IntensityCalculatorUtil

private static class IntensityCalculatorUtil.JepIntensityCalculatorImpl
extends Object
implements IntensityCalculator

An implementation of the IntensityCalculator interface using JEP expressions.

See Also:

• Jep

Field Summary

Fields

Modifier and Type	Field	Description
private final JEP[]	jeps
private final MeanFunction	mean
private final RawFunction	raw

Constructor Summary

Constructors

Modifier	Constructor	Description
private	JepIntensityCalculatorImpl(JEP[] jeps, RawFunction raw, MeanFunction mean)

Method Summary

Modifier and Type	Method	Description
float[]	calculateIntensities(RawData rawData)	Calculate intensities from a raw data spot.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

jeps

private final JEP[] jeps

raw

private final RawFunction raw

mean

private final MeanFunction mean

Constructor Details

JepIntensityCalculatorImpl

private JepIntensityCalculatorImpl(JEP[] jeps,
 RawFunction raw,
 MeanFunction mean)

Method Details

calculateIntensities

public float[] calculateIntensities(RawData rawData)

Description copied from interface: IntensityCalculator

Calculate intensities from a raw data spot.

Specified by:

calculateIntensities in interface IntensityCalculator

Parameters:

rawData - The raw data object the intensities should be calculated from

Returns:

An array of floats, or null if no intensities could be calculated