Package net.sf.basedb.util

Interface IntensityCalculator

All Known Implementing Classes:
IntensityCalculatorUtil.JepIntensityCalculatorImpl
public interface IntensityCalculator
This interface is used together with the IntensityCalculatorUtil class to help a plugin calculate intensities from raw data spots. A plugin must supply an implementation of this interface to be able to use the IntensityCalculatorUtil.createRootBioAssaySet(DbControl, Experiment, Collection, Job, IntensityCalculator, ProgressReporter).

One simple but powerful implementation is available from the IntensityCalculatorUtil.createJepIntensityCalculator(DbControl, RawDataType, String[]) It creates an intensity calculator that parses a string with a mathematical expression.

Version:
2.0
Author:
Nicklas
Last modified
$Date: 2009-04-06 14:52:39 +0200 (må, 06 apr 2009) $

  • Method Summary

    Modifier and Type
    Method
    Description
    float[]
    calculateIntensities(RawData rawData)
    Calculate intensities from a raw data spot.

  • Method Details

    • calculateIntensities

      float[] calculateIntensities(RawData rawData)
      Calculate intensities from a raw data spot.
      Parameters:
      rawData - The raw data object the intensities should be calculated from
      Returns:
      An array of floats, or null if no intensities could be calculated