Package net.sf.basedb.plugins
package net.sf.basedb.plugins
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ClassDescriptionAn abstract base class for all importers that imports data from one or more flat files.Plug-in for importing annotations from simple text files.Internal cache for storing annotation values from the file for a single item.This plug-in executes a plug-in from the Base1 system.Exports bioassay set data as serial or matrix BASEfile:s.Exports bioassay set data to BFS format.A plugin for unpacking a bzip2 compressed file to the BASE file system.This plug-in can import probesets from Affymetrix CDF files as reporters.A plug-in that clone reporter annotations to an experiment.This plugin provides methods to filter a bioassayset based on formulas entered by the user.Exports an array design with features to a GAL file.A plugin for unpacking a gzipped file to the BASE file system.This plugin exports helptexts stored in the database to a XML-file.This plugin imports helptexts into database from a XML-file.An importer plug-in for Illumina raw data.Holds a RawBioAssay and the RawDataBatcher to use for import and the Mapper for all it's data columns.This plugin provides methods to calculate the intensity for a root bioassayset using different formulas.This plugin caluclates extra values from a bioassayset using mathematical formulas entered by the user.This plugin transform channel intensities using mathematical formulas entered by the user.Plug-in that allows a user to manually register an external analysis procedure for derived bioassays and to upload files that was generated by it.Plug-in that allows a user to manually register an external analysis procedure and to upload files that was generated by it.Plug-in that packs one or more selected files and directories into a single file.Exporter for plate mappings.Importer for plate mappings.This plugin exports parameters of a pluginconfiguration into an XML-file.This plugin imports pluginconfiguration from an XML-file.A plugin that imports an
ArrayDesignfrom a printmap.A plugin that imports rawdata from a flatfile.A plugin that imports reporter from a flat file.A plugin that imports features to an ArrayDesign from a flat file.A plugin for unpacking tar, gzipped tar and bzipped tar files to the BASE file system.A plugin for unpacking zip and jar file on the BASE file system.