Package net.sf.basedb.core.plugin

Interface AutoDetectingImporter

All Superinterfaces:

Plugin

All Known Implementing Classes:

AbstractFlatFileImporter, AbstractItemImporter, AnnotationFlatFileImporter, AnnotationTypeImporter, AnyToAnyImporter, ArrayBatchImporter, ArrayDesignImporter, ArraySlideImporter, BioPlateImporter, BioSourceImporter, CdfFileReporterImporter, DerivedBioAssayImporter, ExtractImporter, FileImporter, GtfReporterImporter, GtfReporterMapImporter, HelpImporter, IlluminaRawDataImporter, KitImporter, PhysicalBioAssayImporter, PlateFlatFileImporter, PlateMappingImporter, PluginConfigurationImporter, PrintMapFlatFileImporter, RawBioAssayImporter, RawDataFlatFileImporter, ReporterFlatFileImporter, ReporterMapFlatFileImporter, SampleImporter, TagImporter

public interface AutoDetectingImporter
extends Plugin

This interface should be implemented by an import plugin that supports auto-detection of the file format.

The plugin will be loaded and initialised normally, but instead of the Plugin.run(Request, Response, ProgressReporter) method the methods in this interface are used. There are some additional requirements for an auto-detecting plugin:

• All data must be in a single file
• No additional runtime parameters are supported

Note that it is only if the user chooses to use the auto-detect function in the (web) client application that the methods in this interface are used. If the user manually selects to use a specific plugin the normal Plugin.run(Request, Response, ProgressReporter) method is used. In other words, the plugin must support both methods of importing.

Version:

2.0

Author:

Enell

Last modified

$Date$

Nested Class Summary

Nested classes/interfaces inherited from interface net.sf.basedb.core.plugin.Plugin

Plugin.MainType

Method Summary

Modifier and Type	Method	Description
void	doImport(InputStream in, ProgressReporter progress)	Import the data from the given InputStream.
boolean	isImportable(InputStream in)	Check if the given InputStream can be imported by this plugin.

Methods inherited from interface net.sf.basedb.core.plugin.Plugin

done, getMainType, getPermissions, init, requiresConfiguration, run, supportsConfigurations

Method Details

isImportable

boolean isImportable(InputStream in)
              throws BaseException

Check if the given InputStream can be imported by this plugin.

Parameters:

in - The input stream to check

Returns:

TRUE if the stream can be imported, FALSE otherwise

Throws:

BaseException - If something goes wrong

doImport

void doImport(InputStream in,
ProgressReporter progress)
       throws BaseException

Import the data from the given InputStream.

Parameters:

in - The input stream to read from

progress - Progress reporter used by the caller to keep track of the progress. Null is allowed

Throws:

BaseException - If something goes wrong