Timeline



May 12, 2006:

4:31 PM Changeset [2251] by Johan Enell
can create a serial basefile
4:28 PM Changeset [2250] by Johan Enell
added id to propetyToColumn map
10:37 AM Changeset [2249] by Nicklas Nordborg
Added first version of automated tests for roles. References #221 and #222.
10:26 AM Changeset [2248] by Nicklas Nordborg
Fixed exception when the generated MD5 starts with a digit.
9:32 AM Ticket #228 (Menus for File -> New -> XXX is linked to wrong JSP pages) closed by Martin Svensson
fixed: (In [2247]) Fixes #228. Menus for File -> New -> XXX is linked to …
9:32 AM Changeset [2247] by Martin Svensson
Fixes #228. Menus for File -> New -> XXX is linked to wrong JSP pages. …

May 11, 2006:

2:49 PM Changeset [2246] by Nicklas Nordborg
Fixed placement of buttons
2:49 PM Changeset [2245] by Nicklas Nordborg
Changed annotation type to biosource for one of the annotations
1:39 PM Changeset [2244] by Martin Svensson
Updated test procedure for USER
1:32 PM Ticket #230 (Changing the used amount for the parent sample of an extract is not ...) created by Nicklas Nordborg
A workaround is to remove the parent, save the extract and then re-add …
1:17 PM Ticket #229 (Can't log in using the encrypt password function when the password is ...) closed by Nicklas Nordborg
fixed: (In [2243]) Fixes #229: Can't log in using the encrypt password …
1:17 PM Changeset [2243] by Nicklas Nordborg
Fixes #229: Can't log in using the encrypt password function when the …
12:20 PM Ticket #229 (Can't log in using the encrypt password function when the password is ...) created by Nicklas Nordborg
Seems to be a problem in the core that removes leading 0:s from the …
12:03 PM Changeset [2242] by Nicklas Nordborg
Fixed bug in query for Postgres/MySQL
11:53 AM Changeset [2241] by Nicklas Nordborg
Fixes #226: PermissionDeniedException? when logging in for users that …
11:53 AM Ticket #226 (PermissionDeniedException when logging in for users that have been ...) closed by Nicklas Nordborg
fixed: (In [2241]) Fixes #226: PermissionDeniedException? when logging in for …
11:38 AM Changeset [2240] by Nicklas Nordborg
Fixes #227: PermissionDeniedException? when logging in if a user has …
11:38 AM Ticket #227 (PermissionDeniedException when logging in if a user has been assigned ...) closed by Nicklas Nordborg
fixed: (In [2240]) Fixes #227: PermissionDeniedException? when logging in if a …
11:14 AM Ticket #228 (Menus for File -> New -> XXX is linked to wrong JSP pages) created by nicklas (mail from Longfei Yu <at5863@…
When I added data to the BASE2 system, I got a very tricky problem. …
9:18 AM Ticket #227 (PermissionDeniedException when logging in if a user has been assigned ...) created by Nicklas Nordborg
9:14 AM Ticket #226 (PermissionDeniedException when logging in for users that have been ...) created by Nicklas Nordborg
The specifications say that a user gets read permission on the quota …
9:10 AM Changeset [2239] by Nicklas Nordborg
Fixes #223: Multiplicity should have a default value of 1 for new …
9:10 AM Ticket #223 (Multiplicity should have a default value of 1 for new annotation types) closed by Nicklas Nordborg
fixed: (In [2239]) Fixes #223: Multiplicity should have a default value of 1 …
9:08 AM Changeset [2238] by Nicklas Nordborg
Fixes #225: Power user doesn't have USE permission for protocol types …
9:08 AM Ticket #225 (Power user doesn't have USE permission for protocol types) closed by Nicklas Nordborg
fixed: (In [2238]) Fixes #225: Power user doesn't have USE permission for …
9:01 AM Changeset [2237] by Nicklas Nordborg
Fixes #224: Power user doesn't have access to …
9:01 AM Ticket #224 (Power user doesn't have access to Software/Hardware/Protocols menu items) closed by Nicklas Nordborg
fixed: (In [2237]) Fixes #224: Power user doesn't have access to …
8:32 AM Changeset [2236] by Nicklas Nordborg
Updated test procedures
8:21 AM Ticket #225 (Power user doesn't have USE permission for protocol types) created by Nicklas Nordborg
This is needed since, the power user has create permission for protocols.
8:20 AM Ticket #224 (Power user doesn't have access to Software/Hardware/Protocols menu items) created by Nicklas Nordborg
The power user has create permissio, but the mentioned menu items are …
8:17 AM Ticket #223 (Multiplicity should have a default value of 1 for new annotation types) created by Nicklas Nordborg
Now, it is empty which means unlimiteed number of annotations.

May 10, 2006:

4:29 PM Changeset [2235] by Martin Svensson
Added test procedure for user
4:06 PM Changeset [2234] by Nicklas Nordborg
Updated test procedure for power user
2:57 PM Changeset [2233] by Martin Svensson
Correct misspelling
1:25 PM Changeset [2232] by Nicklas Nordborg
Added some test instructions for root, admin and power user
1:15 PM Ticket #174 (Batch creation of array slides) closed by Martin Svensson
fixed: (In [2231]) Fixes #174 Batch creation of array slides.
1:15 PM Changeset [2231] by Martin Svensson
Fixes #174 Batch creation of array slides.
11:47 AM Changeset [2230] by Martin Svensson
Added documents to use when to write permissions test procedures
11:18 AM Ticket #222 (Automated test program suite for enhanced test procedure) created by Nicklas Nordborg
See ticket #221 for background information. This ticket involves the …
11:14 AM Ticket #221 (Create enhanced test procedure) created by Nicklas Nordborg
Create a test procedure testing a common scenario. 1. Starting with …
9:39 AM Ticket #220 (Plugin permissions) created by Nicklas Nordborg
Plugins should have permissions on their own. The permissions are …
8:49 AM Changeset [2229] by Nicklas Nordborg
Fixes #219: Can't inherit annotation for a new item Instead of a …
8:49 AM Ticket #219 (Can't inherit annotation for a new item) closed by Nicklas Nordborg
fixed: (In [2229]) Fixes #219: Can't inherit annotation for a new item …
8:36 AM Changeset [2228] by Nicklas Nordborg
Fixes #218: Edit experiment goes to new experiment
8:36 AM Ticket #218 (Edit experiment goes to new experiment) closed by Nicklas Nordborg
fixed: (In [2228]) Fixes #218: Edit experiment goes to new experiment
8:34 AM Changeset [2227] by Nicklas Nordborg
Fixed NullPointerException? if base.config isn't found. Now throws …
8:13 AM Ticket #219 (Can't inherit annotation for a new item) created by nicklas (mail from Longfei Yu <lyu@…
I just met a bug when I just tested, and wanted to create a new item, …
8:04 AM Ticket #218 (Edit experiment goes to new experiment) created by nicklas (mail from Longfei Yu <lyu@…
I have noticed there is a little bug about editing the experiment. In …

May 9, 2006:

4:03 PM Changeset [2226] by Nicklas Nordborg
Added CaseExpression?
2:57 PM Changeset [2225] by Nicklas Nordborg
Fixes #86: New importer: Plate mapping
2:57 PM Ticket #86 (New importer: Plate mapping) closed by Nicklas Nordborg
fixed: (In [2225]) Fixes #86: New importer: Plate mapping
1:55 PM Changeset [2224] by Nicklas Nordborg
Added wizard toolbar images.
9:37 AM Changeset [2223] by Nicklas Nordborg
Traschcan now tries to remove as many used items it can by looping …
9:31 AM Ticket #217 (Delete entire directory structure) created by Nicklas Nordborg
When you select a directory and "Delete" it, only that directory is …
9:29 AM Ticket #216 (Show deleted directories in file manager) created by Nicklas Nordborg
It should be possible to include directories with the removed flag in …
9:06 AM Ticket #215 (Incorrect use of DynamicSpotQuery in table view, plot function, filter ...) created by Nicklas Nordborg
If a bioassayset contains merged data, ie. data where one data cube …
8:52 AM Ticket #200 (Add 'Expression builder' interface) closed by Nicklas Nordborg
fixed: (In [2222]) Fixes #200: Add 'Expression builder' interface Added Label …
8:52 AM Changeset [2222] by Nicklas Nordborg
Fixes #200: Add 'Expression builder' interface Added Label tag to …
1:06 AM Changeset [2221] by Jari Häkkinen
Updated demo server to revision 2220.

May 8, 2006:

2:39 PM Changeset [2220] by Johan Enell
DbControl? makes a flush for every action delete

May 5, 2006:

8:49 PM Changeset [2219] by Nicklas Nordborg
Removed @hibernate.class tag (xdoclet complained on windows)
4:07 PM Ticket #198 (New PluginDefinition name) closed by Nicklas Nordborg
wontfix: This is intentional as the name is set by the plugin itself.
4:00 PM Ticket #164 (View all items in a project) closed by Nicklas Nordborg
fixed: (In [2218]) Fixes #164: View all items in a project Some updates to …
4:00 PM Changeset [2218] by Nicklas Nordborg
Fixes #164: View all items in a project Some updates to trashcan to …
1:18 PM Ticket #214 (Inherit annotations throw NullPointerException) closed by Nicklas Nordborg
fixed: (In [2217]) Fixes #214: Inherit annotations throw …
1:18 PM Changeset [2217] by Nicklas Nordborg
Fixes #214: Inherit annotations throw NullPointerException?. Happened …
12:24 PM Ticket #214 (Inherit annotations throw NullPointerException) created by nicklas (mail from Longfei Yu <lyu@…
Actually, I got the error when I click the inherited annotation in …
12:21 PM Ticket #213 (Link items in the trashcan to the correct view page for each item) closed by Nicklas Nordborg
fixed: (In [2216]) Fixes #213: Link items in the trashcan to the correct view …
12:21 PM Changeset [2216] by Nicklas Nordborg
Fixes #213: Link items in the trashcan to the correct view page for …

May 4, 2006:

3:05 PM Changeset [2215] by Jari Häkkinen
Upgraded demo server. Added info about updated database/index.
1:33 PM Changeset [2214] by Nicklas Nordborg
Added image needed by trashcan
1:32 PM Ticket #97 (Trashcan functionality) closed by Nicklas Nordborg
fixed: (In [2213]) Fixes #97: Trashcan functionality
1:32 PM Changeset [2213] by Nicklas Nordborg
Fixes #97: Trashcan functionality
1:22 PM Ticket #213 (Link items in the trashcan to the correct view page for each item) created by Nicklas Nordborg
See also tickets #20 and #157. It would probably make sense to have …
9:10 AM Ticket #212 (Array slide import plugin) created by Nicklas Nordborg
Another way (see #174) to create multiple array slides in one go if …
8:22 AM Ticket #210 (HelpText has a unique constraint on externalId property) closed by Nicklas Nordborg
fixed: (In [2212]) Fixes #210: HelpText? has a unique constraint on externalId …
8:22 AM Changeset [2212] by Nicklas Nordborg
Fixes #210: HelpText? has a unique constraint on externalId property

May 3, 2006:

5:04 PM Ticket #37 (New/Edit user - Handling of duplicate login) closed by Martin Svensson
fixed
5:02 PM Changeset [2211] by Martin Svensson
Fixes #37 New/Edit? user - Handling of duplicate login
3:42 PM Changeset [2210] by Nicklas Nordborg
Fixes #163: The tree of bioassay sets in the analysis should include …
3:42 PM Ticket #163 (The tree of bioassay sets in the analysis should include ...) closed by Nicklas Nordborg
fixed: (In [2210]) Fixes #163: The tree of bioassay sets in the analysis …
3:38 PM Ticket #211 (Show list of child bioassay sets/transformations when viewing a ...) created by Nicklas Nordborg
11:40 AM Ticket #3 (Update doesn't create indexes) closed by Nicklas Nordborg
fixed: (In [2209]) Fixes #3: Update doesn't create indexes
11:40 AM Changeset [2209] by Nicklas Nordborg
Fixes #3: Update doesn't create indexes
9:26 AM Ticket #210 (HelpText has a unique constraint on externalId property) created by Nicklas Nordborg
The externalId should only be unique within the client application …

May 2, 2006:

3:45 PM Changeset [2208] by dominic

Apr 28, 2006:

4:04 PM Changeset [2207] by Nicklas Nordborg
Started to add some database utility methods with the final goal to be …
3:49 PM Ticket #142 (Changing Preference to S or XS prevents from Seeing Annotations ...) closed by Martin Svensson
fixed: (In [2206]) Fixes #142. Changing Preference to S or XS prevents from …
3:49 PM Changeset [2206] by Martin Svensson
Fixes #142. Changing Preference to S or XS prevents from Seeing …
1:59 PM Changeset [2205] by Johan Enell
Base1PluginExecuter kan run executables and upload the files created …
1:55 PM Ticket #162 (Install help texts in flexisble way) closed by Martin Svensson
fixed: (In [2204]) Fixes #162. Install help texts in flexible way. Also a …
1:55 PM Changeset [2204] by Martin Svensson
Fixes #162. Install help texts in flexible way. Also a couple of …
11:31 AM Ticket #209 (Add JepMapper to FlatFileParser) created by Nicklas Nordborg
The JepMapper? would take a JEP expression and use to calculate data …
11:20 AM Ticket #1 (column names in flatfile parser) closed by Nicklas Nordborg
fixed: (In [2203]) Fixes #1: column names in flatfile parser Also changed …
11:20 AM Changeset [2203] by Nicklas Nordborg
Fixes #1: column names in flatfile parser Also changed migration so it …

Apr 27, 2006:

4:16 PM Changeset [2202] by Jari Häkkinen
Removed schema change flag for RC1.2200.
3:53 PM Changeset [2201] by Jari Häkkinen
Updated demo server.
2:19 PM Changeset [2200] by Jari Häkkinen
Fixed spelling errors.
12:18 PM Changeset [2199] by Nicklas Nordborg
Fixes #205: Directories are handled as selected even if they are …
12:18 PM Ticket #205 (Directories are handled as selected even if they are unticked in the ...) closed by Nicklas Nordborg
fixed: (In [2199]) Fixes #205: Directories are handled as selected even if …
12:04 PM Ticket #208 (Parametervisibility when running a plugin) closed by Nicklas Nordborg
fixed: (In [2198]) Fixes #208: Parameter visibility when running a plugin
12:04 PM Changeset [2198] by Nicklas Nordborg
Fixes #208: Parameter visibility when running a plugin
11:02 AM Ticket #194 (Permission denied: Not allowed to use B) closed by Nicklas Nordborg
fixed: (In [2197]) Fixes #194: Permission denied: Not allowed to use B
11:02 AM Changeset [2197] by Nicklas Nordborg
Fixes #194: Permission denied: Not allowed to use B
10:43 AM Ticket #208 (Parametervisibility when running a plugin) created by Johan Enell
Parameters can be created with a 'null' label. They shouldnt be …
9:23 AM Ticket #207 (Display the logged in user's permissions on items) created by Nicklas Nordborg
It would be useful to know the permission one has on each item, both …
9:10 AM Ticket #103 (Display name of current item in 'Set access permissions' dialog) closed by Martin Svensson
fixed: (In [2196]) Fixes #103 Display name of current item in 'Set access …
9:10 AM Changeset [2196] by Martin Svensson
Fixes #103 Display name of current item in 'Set access permissions' dialog
9:09 AM Ticket #206 (Display and filter on permisssion in lists) created by Nicklas Nordborg
This is very annoying when these listings are used for linking item A …
8:42 AM Ticket #205 (Directories are handled as selected even if they are unticked in the ...) created by Martin Svensson
View->Files A directory is handled as selected after it has been …

Apr 26, 2006:

4:03 PM Tickets #186,​152 batch updated by Nicklas Nordborg
fixed: (In [2195]) Fixes #186 and #152 * The InteractivePlugin?.isInContext …
4:03 PM Changeset [2195] by Nicklas Nordborg
Fixes #186 and #152 * The InteractivePlugin?.isInContext should return …
3:07 PM Ticket #181 (Import a plug-in configuration file from BASE 1) closed by Johan Enell
duplicate: This ticket is closed and moved to ticket #204.
3:05 PM Ticket #204 (Base1 plug-in runner) created by Johan Enell
Base2 should be able to run old base1 plug-ins. Create a plug-in that …
2:56 PM Ticket #203 (Infinite maxlength on StringParameterType) created by Johan Enell
Setting maxlength to null on a StringParameterType? means that the …
2:54 PM Ticket #192 (Analysis plugins that adds data to an experiment can't commit if the ...) closed by Nicklas Nordborg
fixed: (In [2194]) Fixes #192: Analysis plugins that adds data to an …
2:54 PM Changeset [2194] by Nicklas Nordborg
Fixes #192: Analysis plugins that adds data to an experiment can't …
2:25 PM Changeset [2193] by Nicklas Nordborg
Fixed compilation error in test classes
1:09 PM Ticket #135 (Write documentation: 3c) Internals of the core API - Plugin system) closed by Nicklas Nordborg
fixed: (In [2192]) Fixes #135: Write documentation: 3c) Internals of the core …
1:09 PM Changeset [2192] by Nicklas Nordborg
Fixes #135: Write documentation: 3c) Internals of the core API - …

Apr 25, 2006:

4:31 PM Changeset [2191] by Martin Svensson
Fixes #156 second part. Now it's possible to overwrite file if the …
4:31 PM Ticket #156 (Creating a new file with the same name as a previously deleted file ...) closed by Martin Svensson
fixed: (In [2191]) Fixes #156 second part. Now it's possible to overwrite …
4:08 PM Ticket #182 (Allow plugin parameters to use enumerations where one value is ...) closed by Nicklas Nordborg
fixed: (In [2190]) Fixes #182: Allow plugin parameters to use enumerations …
4:08 PM Changeset [2190] by Nicklas Nordborg
Fixes #182: Allow plugin parameters to use enumerations where one …
3:01 PM Changeset [2189] by Nicklas Nordborg
Added option to display toolbars with or without images and/or text.
2:37 PM Changeset [2188] by Nicklas Nordborg
Check for null before printing to console
2:37 PM Ticket #202 (TestPrintMapFlatFileImporter throws exception: Import failed on line ...) created by Nicklas Nordborg
2:33 PM Changeset [2187] by Nicklas Nordborg
Fixed bug in how TestExperiment? use IntensityCalculatorPlugin?
2:22 PM Ticket #85 (Import plugins should specify filter for FileType) closed by Nicklas Nordborg
fixed: (In [2186]) Fixes #85: Import plugins should specify filter for …
2:22 PM Changeset [2186] by Nicklas Nordborg
Fixes #85: Import plugins should specify filter for FileType? Also …
12:51 PM Ticket #201 (Experiment directory) created by Johan Enell
An experiment should have a directory tied to it.
10:00 AM Ticket #200 (Add 'Expression builder' interface) created by Nicklas Nordborg
To make it easier to build expressions for those who don't want to …
9:58 AM Ticket #199 (Use reporter lists in filter for bioassay sets) created by Nicklas Nordborg
This is currently not supported since it is not possible to access …
9:57 AM Ticket #125 (Create filtered bioassay sets) closed by Nicklas Nordborg
fixed: (In [2185]) Fixes #125: Create filtered bioassay sets
9:57 AM Changeset [2185] by Nicklas Nordborg
Fixes #125: Create filtered bioassay sets

Apr 24, 2006:

4:03 PM Changeset [2184] by Nicklas Nordborg
Added filter image
3:59 PM Changeset [2183] by Nicklas Nordborg
First version of filtering a bioassayset.
3:00 PM Ticket #198 (New PluginDefinition name) created by Johan Enell
When creating a new PluginDefinition? there is now way of editing the name.
2:43 PM Changeset [2182] by Martin Svensson
Made some minor improvments on the HelpExporter?- and HelpImporter? plugin.
2:38 PM Ticket #197 (Submenu onClick) created by Johan Enell
When clicking on a submanu in a menu the submenu should expand/collaps.
1:40 PM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) created by Nicklas Nordborg
If a transformation doesn't affect the number of child bioassays, such …
10:36 AM Changeset [2181] by Jari Häkkinen
Demo server updated.
10:15 AM Changeset [2180] by Jari Häkkinen
Fixed cross references within doc and added info regarding MySQL 5.0

Apr 21, 2006:

4:25 PM Changeset [2179] by Martin Svensson
Fixes #178 Create plugin for importing help texts
4:25 PM Ticket #178 (Create plugin for importing help texts) closed by Martin Svensson
fixed: (In [2179]) Fixes #178 Create plugin for importing help texts
3:04 PM Changeset [2178] by Nicklas Nordborg
Fixed margin width of footnote page
3:02 PM Changeset [2177] by Nicklas Nordborg
Bad links and popup window size
2:42 PM Changeset [2176] by Nicklas Nordborg
Fixes first part of ticket #156: Creating a new file with the same …
2:25 PM Changeset [2175] by Nicklas Nordborg
Fixed some IE related display anomalies Added some more icons
1:28 PM Ticket #60 (BioAssay data export) closed by Nicklas Nordborg
fixed: (In [2174]) Fixes #60: BioAssay? data export
1:27 PM Changeset [2174] by Nicklas Nordborg
Fixes #60: BioAssay? data export
9:34 AM Changeset [2173] by Nicklas Nordborg
Fixed some vertical alignment problems of the new icons. Added icons …

Apr 20, 2006:

4:59 PM Changeset [2172] by Martin Svensson
Added option to create a new HelpItem? if the database doesn't contain …
4:08 PM Ticket #43 (New icons in web interface) closed by Nicklas Nordborg
fixed: (In [2171]) Fixes #43: New icons in web interface
4:08 PM Changeset [2171] by Nicklas Nordborg
Fixes #43: New icons in web interface
2:25 PM Changeset [2170] by Martin Svensson
Added a method to validate a XML-inputstream
10:45 AM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) created by Nicklas Nordborg
In the current implementation you must first check the item and then …
8:48 AM Ticket #148 (Should read permission in BASE 1 be migrated as read/use permission in ...) closed by Nicklas Nordborg
fixed: (In [2169]) Fixes #148: Should read permission in BASE 1 be migrated …
8:48 AM Changeset [2169] by Nicklas Nordborg
Fixes #148: Should read permission in BASE 1 be migrated as read/use …
8:33 AM Changeset [2168] by Nicklas Nordborg
Made ExampleImporter? an AutoDetectingImporter?

Apr 19, 2006:

4:06 PM Ticket #193 (Nullpointer exception when running an AutoDetectImporter plugin) closed by Nicklas Nordborg
fixed: (In [2167]) Fixes #193: Nullpointer exception when running an …
4:05 PM Changeset [2167] by Nicklas Nordborg
Fixes #193: Nullpointer exception when running an AutoDetectImporter? plugin
3:30 PM Tickets #96,​158 batch updated by Nicklas Nordborg
fixed: (In [2166]) Fixes #96 and #158: * Inherit annotations * Resizable …
3:30 PM Changeset [2166] by Nicklas Nordborg
Fixes #96 and #158: * Inherit annotations * Resizable annotation tab …
3:11 PM Ticket #194 (Permission denied: Not allowed to use B) created by Nicklas Nordborg
Happens when a user has been given WRITE permission to one item (A), …
11:00 AM Ticket #193 (Nullpointer exception when running an AutoDetectImporter plugin) created by Martin Svensson
Running an AutoDectectImporter? plugin that has no configuration …
9:34 AM Ticket #183 (cannot add annotation and new Items) closed by Jari Häkkinen
wontfix: This problem is due to mixing of classes from different subversion …
8:00 AM Ticket #192 (Analysis plugins that adds data to an experiment can't commit if the ...) created by Nicklas Nordborg
The problem is that we have to update the disk usage for the …

Apr 18, 2006:

2:00 PM Ticket #191 (Mobile number field in user info?) created by Jari Häkkinen
Should we add this? Maybe more columns such as skype contact, ICQ ... …
1:57 PM Ticket #190 (Beyond last page when filter is changed) created by Jari Häkkinen
If a filter is applied after browsing a couple of pages in a list (eg …
12:27 PM Changeset [2165] by Martin Svensson
Change the export format for helptexts
11:25 AM Ticket #171 (Experimental factor for experiments) closed by Nicklas Nordborg
fixed: (In [2164]) Fixes #171: Experimental factor for experiments
11:25 AM Changeset [2164] by Nicklas Nordborg
Fixes #171: Experimental factor for experiments
8:06 AM Changeset [2163] by Nicklas Nordborg
Webclient is installed by net.sf.basedb.install.WebClient?
8:02 AM Ticket #189 (Allow export plugins to send download immediately to client) created by Nicklas Nordborg
Maybe it is possible to add a Response.getOut() which provides an …
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