Opened 17 years ago
Closed 17 years ago
#928 closed defect (fixed)
Can't import feature to an array design which has metadata about number of features in a file
Reported by: | Nicklas Nordborg | Owned by: | everyone |
---|---|---|---|
Priority: | major | Milestone: | BASE 2.6 |
Component: | core | Version: | |
Keywords: | Cc: |
Description
- Create an array design and select a platform which has a metadata extractor, for example the Illumina package from http://baseplugins.thep.lu.se/wiki/net.sf.basedb.illumina
- Attach a BGX file to the array design. The metadata extractor will add information about the number of probes in the file:
Features yes (db: 0; file: 731)
- Use the import button and enter parameters for the import plug-in.
- The plug-in will stop with the following error message: Permission denied: Features has already been added to New array design
Stack trace:
net.sf.basedb.core.PermissionDeniedException: Permission denied: Features has already been added to New array design at net.sf.basedb.core.ArrayDesign.getFeatureBatcher(ArrayDesign.java:711) at net.sf.basedb.plugins.ReporterMapFlatFileImporter.begin(ReporterMapFlatFileImporter.java:522) at net.sf.basedb.plugins.AbstractFlatFileImporter.doImport(AbstractFlatFileImporter.java:511) at net.sf.basedb.plugins.AbstractFlatFileImporter.run(AbstractFlatFileImporter.java:441) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:108) at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:487) at java.lang.Thread.run(Thread.java:619)
If no BGX file is selected in step 2 the import works.
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(In [4138]) Fixes #928