Opened 14 years ago

Closed 14 years ago

#928 closed defect (fixed)

Can't import feature to an array design which has metadata about number of features in a file

Reported by: Nicklas Nordborg Owned by: everyone
Priority: major Milestone: BASE 2.6
Component: core Version:
Keywords: Cc:

Description

  1. Create an array design and select a platform which has a metadata extractor, for example the Illumina package from http://baseplugins.thep.lu.se/wiki/net.sf.basedb.illumina
  1. Attach a BGX file to the array design. The metadata extractor will add information about the number of probes in the file: Features yes (db: 0; file: 731)
  1. Use the import button and enter parameters for the import plug-in.
  1. The plug-in will stop with the following error message: Permission denied: Features has already been added to New array design

Stack trace:

net.sf.basedb.core.PermissionDeniedException: Permission denied: Features has already been added to New array design
at net.sf.basedb.core.ArrayDesign.getFeatureBatcher(ArrayDesign.java:711)
at net.sf.basedb.plugins.ReporterMapFlatFileImporter.begin(ReporterMapFlatFileImporter.java:522)
at net.sf.basedb.plugins.AbstractFlatFileImporter.doImport(AbstractFlatFileImporter.java:511)
at net.sf.basedb.plugins.AbstractFlatFileImporter.run(AbstractFlatFileImporter.java:441)
at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:108)
at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:487)
at java.lang.Thread.run(Thread.java:619)

If no BGX file is selected in step 2 the import works.

Change History (1)

comment:1 Changed 14 years ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

(In [4138]) Fixes #928

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