Opened 17 years ago

Closed 17 years ago

#352 closed task (fixed)

Connect parts of the TM4 software suite to BASE

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone: BASE 2.2
Component: core Version: trunk
Keywords: Cc:

Description

We are going to connect parts of the TM4 suite (​http://www.tm4.org) to BASE.

Change History (12)

comment:1 by Jari Häkkinen, 17 years ago

Type: defect → task

comment:2 by Jari Häkkinen, 17 years ago

Component: web → core
Owner: changed from Johan Enell to Nicklas Nordborg

comment:3 by Jari Häkkinen, 17 years ago

Milestone: BASE 2.x+ → BASE 2.2
Owner: changed from Nicklas Nordborg to Jari Häkkinen

comment:4 by Jari Häkkinen, 17 years ago

Status: new → assigned

Relates to ticket:10

comment:5 by Jari Häkkinen, 17 years ago

(In [3096]) Addresses #10, #352, #365. First checkin for JWS use to launch MeV.

comment:6 by Jari Häkkinen, 17 years ago

(In [3100]) Addresses #10 and #352. Now actually using the bioassayset used to trigger MeV.|

comment:7 by Jari Häkkinen, 17 years ago

(In [3101]) Addresses #10 and #352. Fixed problem with non-appearing tool icons in MeV.

comment:8 by Jari Häkkinen, 17 years ago

(In [3102]) Addresses #10 and #352. MeV jsp uses Servlet API to retrieve server information (name,port,...).

comment:9 by Jari Häkkinen, 17 years ago

(In [3105]) Addresses #10 and #352. MeV uses system tmp directory system properties.

comment:10 by Jari Häkkinen, 17 years ago

(In [3106]) Addresses #10 and #352. Removed hard coded indexes for datamatrix retrieval.

comment:11 by Jari Häkkinen, 17 years ago

(In [3110]) Addresses #10 and #352. Unique temporary filenames used at client side.

comment:12 by Jari Häkkinen, 17 years ago

Resolution: → fixed
Status: assigned → closed

MeV is now integrated as a Java Web Start application. It requires network and file access so it is signed. You must accept the certificate to be able to run MeV. All algorithms are avaiable for the user but they are currently not fully supported. The main objective was to get Hierarchical clustering working. The integration will be improved in upcoming releases.

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