Opened 17 years ago

Closed 16 years ago

#352 closed task (fixed)

Connect parts of the TM4 software suite to BASE

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone: BASE 2.2
Component: core Version: trunk
Keywords: Cc:

Description

We are going to connect parts of the TM4 suite (​http://www.tm4.org) to BASE.

Change History (12)

comment:1 Changed 17 years ago by Jari Häkkinen

Type: defect → task

comment:2 Changed 17 years ago by Jari Häkkinen

Component: web → core
Owner: changed from Johan Enell to Nicklas Nordborg

comment:3 Changed 17 years ago by Jari Häkkinen

Milestone: BASE 2.x+ → BASE 2.2
Owner: changed from Nicklas Nordborg to Jari Häkkinen

comment:4 Changed 17 years ago by Jari Häkkinen

Status: new → assigned

Relates to ticket:10

comment:5 Changed 16 years ago by Jari Häkkinen

(In [3096]) Addresses #10, #352, #365. First checkin for JWS use to launch MeV.

comment:6 Changed 16 years ago by Jari Häkkinen

(In [3100]) Addresses #10 and #352. Now actually using the bioassayset used to trigger MeV.|

comment:7 Changed 16 years ago by Jari Häkkinen

(In [3101]) Addresses #10 and #352. Fixed problem with non-appearing tool icons in MeV.

comment:8 Changed 16 years ago by Jari Häkkinen

(In [3102]) Addresses #10 and #352. MeV jsp uses Servlet API to retrieve server information (name,port,...).

comment:9 Changed 16 years ago by Jari Häkkinen

(In [3105]) Addresses #10 and #352. MeV uses system tmp directory system properties.

comment:10 Changed 16 years ago by Jari Häkkinen

(In [3106]) Addresses #10 and #352. Removed hard coded indexes for datamatrix retrieval.

comment:11 Changed 16 years ago by Jari Häkkinen

(In [3110]) Addresses #10 and #352. Unique temporary filenames used at client side.

comment:12 Changed 16 years ago by Jari Häkkinen

Resolution: → fixed
Status: assigned → closed

MeV is now integrated as a Java Web Start application. It requires network and file access so it is signed. You must accept the certificate to be able to run MeV. All algorithms are avaiable for the user but they are currently not fully supported. The main objective was to get Hierarchical clustering working. The integration will be improved in upcoming releases.

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