#1623 closed task (fixed)
Create reporter importer for GTF files
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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Priority: | critical | Milestone: | BASE 3.0 |
Component: | coreplugins | Version: | |
Keywords: | Cc: |
Description
A description of the GTF file format can be found at: http://www.ensembl.org/info/website/upload/gff.html
The importer should use either the "gene_id" or "transcript_id" as the reporter id and also have an option to use a prefix (eg. hg19).
Other reporter annotations should be configurable to use either one of the standard columns or one of the attributes.
We should provide a default configuration using a standard setup.
This is related to #1153.
Change History (4)
comment:1 by , 13 years ago
Owner: | changed from | to
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Status: | new → assigned |
comment:2 by , 13 years ago
comment:3 by , 13 years ago
Resolution: | → fixed |
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Status: | assigned → closed |
comment:4 by , 13 years ago
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(In [5761]) References #1623: Create reporter importer for GTF files
Column mapping expressions was incorrect. Should be <gene_id> / <transcript_id>.