Opened 16 years ago
Closed 16 years ago
#1028 closed task (fixed)
Plug-in for batch upload/modification of items
Reported by: | Jari Häkkinen | Owned by: | Jari Häkkinen |
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Priority: | blocker | Milestone: | BASE 2.8 |
Component: | coreplugins | Version: | trunk |
Keywords: | Cc: |
Description (last modified by )
References to the latest versions of files (please keep this list up to date):
- Developer view (batchimport.txt)
- User perspective (batchimport_userperspective.txt)
Sample files:
- Sample spreadsheet with comments (batchimport_sample.ods). The spreadsheet contains multiple sample sheets for use with the importer. Each item type to be supported has a separate sheet, the sheet content may have comments below the legend on this page. Currently the BASE internal 'id' is not used. Types to be done are Hybridization, Scan, RawBioassay, and Experiment.
Attachments (7)
Change History (33)
comment:1 by , 16 years ago
Status: | new → assigned |
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comment:2 by , 16 years ago
Priority: | major → blocker |
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by , 16 years ago
Attachment: | batchimport.txt added |
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by , 16 years ago
Attachment: | batchimport-2.txt added |
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comment:3 by , 16 years ago
I have added a version 2 of the specification doc. There are a couple of comments, look for JH. I'll create sample docs matching the specs, and I am looking into the list of importable objects.
comment:4 by , 16 years ago
Description: | modified (diff) |
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comment:5 by , 16 years ago
In the batchimport.txt document there is a discussion on multi-item references:
Data for a single item may be split onto multiple lines. The first line contains simple properties and single-item references, and the first multi-item reference. If there are more multi-item references they should be on the following lines with empty values in all other columns, except for the column holding the item identifier, which must have the same value on all lines. If the following lines contains other data, this should be ignored, or it may be considered an error condition. It may be caused by giving two items the same name by accident.
In the above text there is a reference to the item reference column. Maybe it is implied, but I think we should specifically state that this column is the same as used by single item references. In the openoffice sample document I have used the same column for simple and pooled samples (see Sample sheet in attached spreadsheet).
comment:6 by , 16 years ago
I added a spreadsheet with sample sheets for use with the batch item importer.
comment:7 by , 16 years ago
Description: | modified (diff) |
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by , 16 years ago
Attachment: | batchimport_userperspective-2.txt added |
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comment:9 by , 16 years ago
Description: | modified (diff) |
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Updated spreadsheet, sample information to the labeled extracts step with pooling is available in the doc.
by , 16 years ago
Attachment: | batchimport_userperspective-3.txt added |
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comment:10 by , 16 years ago
Description: | modified (diff) |
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Major revision of the user perspective, and the sample openoffice is now complete. All items that should be supported by the importer is discussed and described in the docs.
comment:11 by , 16 years ago
Summary: | Write specification for batch upload/modificatin of items → Plug-in for batch upload/modification of items |
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comment:12 by , 16 years ago
comment:13 by , 16 years ago
comment:14 by , 16 years ago
Description: | modified (diff) |
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comment:15 by , 16 years ago
comment:16 by , 16 years ago
comment:17 by , 16 years ago
comment:18 by , 16 years ago
Updated sample spreadsheet. Biosources, Samples, Extracts, Labeled extracs are tested with the batch importers.
comment:19 by , 16 years ago
comment:20 by , 16 years ago
(In [4426]) References #1028: Plug-in for batch upload/modification of items
Added:
- HybridizationImporter
- ScanImporter
- RawBioAssayImporter (not complete)
comment:21 by , 16 years ago
Description: | modified (diff) |
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Updated the sample spreadsheet, now decimal point is used instead of decimal comma.
comment:22 by , 16 years ago
comment:23 by , 16 years ago
comment:24 by , 16 years ago
Description: | modified (diff) |
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comment:25 by , 16 years ago
comment:26 by , 16 years ago
Resolution: | → fixed |
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Status: | assigned → closed |
First draft of a developers view