Package net.sf.basedb.util.overview.loader

Class RootRawBioAssayLoader

java.lang.Object

net.sf.basedb.util.overview.loader.AbstractNodeLoader<I>

net.sf.basedb.util.overview.loader.BasicItemNodeLoader<RootRawBioAssay>

net.sf.basedb.util.overview.loader.RootRawBioAssayLoader

All Implemented Interfaces:

NodeLoader<RootRawBioAssay>

public class RootRawBioAssayLoader
extends BasicItemNodeLoader<RootRawBioAssay>

Node loader implementation for root raw bioassays. Used in the reverse-loading direction only when going from experiments to raw bioassays. This loader replaces the raw bioassays loader.

Since:

3.6

Author:

Nicklas

Field Summary

Fields inherited from class net.sf.basedb.util.overview.loader.BasicItemNodeLoader

ALLOW_ROOT_NODE, allowAsRootNode, DENY_ROOT_NODE, factoryKey, nameGenerator

Constructor Summary

Constructors

Constructor	Description
RootRawBioAssayLoader()

Method Summary

Modifier and Type	Method	Description
Node	createReverseNode(DbControl dc, OverviewContext context, Node experimentNode)	Create a reverse-loading raw bioassay nodes from a given experiment node.
protected void	loadPropertyChildNodes(DbControl dc, OverviewContext context, Node rawBioAssayNode)	Load property nodes for a raw bioassay: Annotations: AnnotationLoader.createPropertyNode(DbControl, OverviewContext, Node) Data files: DataFileLoader.createPropertyNode(DbControl, OverviewContext, Node) Platform: PlatformLoader.createPropertyNode(DbControl, OverviewContext, Node) Protocol: ProtocolLoader.createPropertyNode(DbControl, OverviewContext, Node) Software: SoftwareLoader.createPropertyNode(DbControl, OverviewContext, Node) Array design: ArrayDesignLoader.createPropertyNode(DbControl, OverviewContext, Node)
protected void	loadReverseChildNodes(DbControl dc, OverviewContext context, Node rawBioAssayNode)	Loads the derived bioassay node that this raw bioassay is created from.

Methods inherited from class net.sf.basedb.util.overview.loader.BasicItemNodeLoader

createItemNode, createRootNode, getNodeFactory, getNodeFactory, getNodeLoader, getNodeLoaderFactory, getNodeNameGenerator, getNodeValidator, getNodeValidatorFactory, postValidateFolder

Methods inherited from class net.sf.basedb.util.overview.loader.AbstractNodeLoader

createForwardNode, createPropertyNode, loadChildNodes, loadChildNodesOfFolderNode, loadChildNodesOfItemNode, loadForwardChildNodes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RootRawBioAssayLoader

public RootRawBioAssayLoader()

Method Details

createReverseNode

public Node createReverseNode(DbControl dc,
 OverviewContext context,
 Node experimentNode)

Create a reverse-loading raw bioassay nodes from a given experiment node. The returned node is a folder-type node containing nodes for each raw bioassay is part of the experiment.

Specified by:

createReverseNode in interface NodeLoader<RootRawBioAssay>

Overrides:

createReverseNode in class AbstractNodeLoader<RootRawBioAssay>

Parameters:

dc - The DbControl to use for database access

context - The overview context

experimentNode - The child node

Returns:

The folder node for the raw bioassays

loadPropertyChildNodes

protected void loadPropertyChildNodes(DbControl dc,
 OverviewContext context,
 Node rawBioAssayNode)

Load property nodes for a raw bioassay:

• Annotations: AnnotationLoader.createPropertyNode(DbControl, OverviewContext, Node)
• Data files: DataFileLoader.createPropertyNode(DbControl, OverviewContext, Node)
• Platform: PlatformLoader.createPropertyNode(DbControl, OverviewContext, Node)
• Protocol: ProtocolLoader.createPropertyNode(DbControl, OverviewContext, Node)
• Software: SoftwareLoader.createPropertyNode(DbControl, OverviewContext, Node)
• Array design: ArrayDesignLoader.createPropertyNode(DbControl, OverviewContext, Node)

Overrides:

loadPropertyChildNodes in class AbstractNodeLoader<RootRawBioAssay>

loadReverseChildNodes

protected void loadReverseChildNodes(DbControl dc,
 OverviewContext context,
 Node rawBioAssayNode)

Loads the derived bioassay node that this raw bioassay is created from.

Overrides:

loadReverseChildNodes in class AbstractNodeLoader<RootRawBioAssay>

See Also:

• DerivedBioAssayLoader.createReverseNode(DbControl, OverviewContext, Node)