Package net.sf.basedb.util

Class BioAssaySetFilterUtil

java.lang.Object

net.sf.basedb.util.BioAssaySetFilterUtil

public class BioAssaySetFilterUtil
extends Object

This is a utility class for plugins that filters bioassay set data.

Version:

2.0

Author:

Nicklas

Last modified

$Date: 2010-04-20 10:02:16 +0200 (ti, 20 apr 2010) $

Constructor Summary

Constructors

Constructor	Description
BioAssaySetFilterUtil()

Method Summary

Modifier and Type	Method	Description
static BioAssaySet	createFilteredBioAssaySet(DbControl dc, BioAssaySet parent, List<BioAssay> bioAssays, Job job, Restriction filter, ProgressReporter progress)	Create a filtered bioassay set from a parent bioassay set using a simple restriction.
static BioAssaySet	createFilteredBioAssaySet(DbControl dc, BioAssaySet parent, List<BioAssay> bioAssays, Job job, DynamicFilter filter, ProgressReporter progress)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BioAssaySetFilterUtil

public BioAssaySetFilterUtil()

Method Details

createFilteredBioAssaySet

public static BioAssaySet createFilteredBioAssaySet(DbControl dc,
BioAssaySet parent,
List<BioAssay> bioAssays,
Job job,
Restriction filter,
ProgressReporter progress)
                                             throws InvalidDataException,
BaseException

Create a filtered bioassay set from a parent bioassay set using a simple restriction. The filtering is done by the FilterBatcher.insert(net.sf.basedb.core.AbstractSqlQuery) which is very fast since most of the work is done by the database.

The calling code mustn't forget to commit the transaction.

Parameters:

dc - The DbControl object to use for database acecss

parent - The parent bioassay set to start from

bioAssays - Only filter on the specified bio assays, if the list is null or empty all bioassays will be filtered

job - The job that the transformation should be linked to, or null if this method isn't called by a job

filter - A filter expression

progress - A ProgressReporter object (optional, current not used)

Returns:

A filtered bioassay set.

Throws:

InvalidDataException - If any of the required parameters is null

BaseException - If creating a filtered bioassay set fails in some way.

createFilteredBioAssaySet

public static BioAssaySet createFilteredBioAssaySet(DbControl dc,
BioAssaySet parent,
List<BioAssay> bioAssays,
Job job,
DynamicFilter filter,
ProgressReporter progress)
                                             throws InvalidDataException,
BaseException

Throws:

InvalidDataException

BaseException