Package net.sf.basedb.util

Interface DynamicFilter

All Known Implementing Classes:
IncludeExcludeFilter
public interface DynamicFilter
This interface is used together with the BioAssaySetFilterUtil class to help a plugin filter the data of a bioassay set. A plugin must supply an implementation of this interface to be able to use the BioAssaySetFilterUtil.createFilteredBioAssaySet(DbControl, BioAssaySet, List, Job, DynamicFilter, ProgressReporter) method.
Version:
2.0
Author:
Nicklas
Last modified
$Date: 2009-04-06 14:52:39 +0200 (må, 06 apr 2009) $

  • Method Summary

    Modifier and Type
    Method
    Description
    void
    configureQuery(SqlQuery query)
    Configure the query before it is used.
    boolean
    includeSpot(SqlResult data)
    Check if a spot should be included in the filtered output or not.
    boolean
    useIncludeSpot()
    If the includeSpot method must be called for each spot or not.

  • Method Details

    • configureQuery

      void configureQuery(SqlQuery query)
      Configure the query before it is used. This includes selecting any columns that is needed by the includeSpot(SqlResult) method later and joining related tables (ie. raw data, reporter) that is needed by the filter.
      Parameters:
      query - The query to configure

    • useIncludeSpot

      boolean useIncludeSpot()
      If the includeSpot method must be called for each spot or not. If FALSE is returned, all rows that are returned by the query are included in the filtered bioassay set.
      Returns:
      TRUE or FALSE

    • includeSpot

      boolean includeSpot(SqlResult data) throws SQLException
      Check if a spot should be included in the filtered output or not.
      Parameters:
      data - The current data row to check
      Returns:
      TRUE if the spot passed the filter, FALSE otherwise
      Throws:
      SQLException - If running SQL statement fails.