Package net.sf.basedb.core.data

Class RootRawBioAssayData

java.lang.Object

net.sf.basedb.core.data.BasicData

net.sf.basedb.core.data.RootRawBioAssayData

All Implemented Interfaces:

AnnotatableData, IdentifiableData, NameableData

public class RootRawBioAssayData
extends BasicData
implements AnnotatableData, NameableData

This class holds the link between experiments and raw bioassays including an annotation set that is representing the experimental factor values.

Since:

3.6

Author:

Nicklas

See Also:

• RootRawBioAssay

Hibernate: class

table="`RootRawBioAssays`" lazy="true"

Field Summary

Fields

Modifier and Type	Field	Description
private AnnotationSetData	annotationSet
private String	description
private ExperimentData	experiment
private Set<AnnotationLink>	links
private String	name
private RawBioAssayData	rawBioAssay

Fields inherited from interface net.sf.basedb.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

Constructors

Constructor	Description
RootRawBioAssayData()

Method Summary

Modifier and Type	Method	Description
Set<AnnotationLink>	getAnnotations()	Short-cut to all annotations belonging to this item.
AnnotationSetData	getAnnotationSet()	Get the annotation set that holds the annotations for an item.
String	getDescription()	Get the description for the item.
ExperimentData	getExperiment()	Get the experiment this root raw bioassay belongs to.
String	getName()	Get the name of the item.
RawBioAssayData	getRawBioAssay()	Get the raw bioassay root raw bioassay is derived from.
(package private) void	setAnnotations(Set<AnnotationLink> links)
void	setAnnotationSet(AnnotationSetData annotationSet)	Change the annotation set.
void	setDescription(String description)	Set the description for the item.
void	setExperiment(ExperimentData experiment)
void	setName(String name)	Set the name of the item.
void	setRawBioAssay(RawBioAssayData rawBioAssay)

Methods inherited from class net.sf.basedb.core.data.BasicData

equals, getId, getVersion, hashCode, setId, setVersion, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.sf.basedb.core.data.IdentifiableData

getId, getVersion

Field Details

annotationSet

private AnnotationSetData annotationSet

links

private Set<AnnotationLink> links

name

private String name

description

private String description

experiment

private ExperimentData experiment

rawBioAssay

private RawBioAssayData rawBioAssay

Constructor Details

RootRawBioAssayData

public RootRawBioAssayData()

Method Details

getAnnotationSet

public AnnotationSetData getAnnotationSet()

Description copied from interface: AnnotatableData

Get the annotation set that holds the annotations for an item.

Specified by:

getAnnotationSet in interface AnnotatableData

Returns:

An AnnotationSetData item or null if no annotations exist

setAnnotationSet

public void setAnnotationSet(AnnotationSetData annotationSet)

Description copied from interface: AnnotatableData

Change the annotation set. Use null to remove the annotations.

Specified by:

setAnnotationSet in interface AnnotatableData

Parameters:

annotationSet - Annotation set to change to.

getAnnotations

public Set<AnnotationLink> getAnnotations()

Description copied from interface: AnnotatableData

Short-cut to all annotations belonging to this item. Used for HQL queries only. This is the inverse end. NOTE! The property-ref="annotationSet" require that AnnotationSetData implements Serializable

Specified by:

getAnnotations in interface AnnotatableData

setAnnotations

void setAnnotations(Set<AnnotationLink> links)

getName

public String getName()

Description copied from interface: NameableData

Get the name of the item.

Specified by:

getName in interface NameableData

Returns:

A String with the name of the item

setName

public void setName(String name)

Description copied from interface: NameableData

Set the name of the item. The name cannot be null and mustn't be longer than the value specified by the MAX_NAME_LENGTH constant.

Specified by:

setName in interface NameableData

Parameters:

name - The new name for the item

getDescription

public String getDescription()

Description copied from interface: NameableData

Get the description for the item.

Specified by:

getDescription in interface NameableData

Returns:

A String with a description of the item

setDescription

public void setDescription(String description)

Description copied from interface: NameableData

Set the description for the item. The description can be null but mustn't be longer than the value specified by the MAX_DESCRIPTION_LENGTH constant.

Specified by:

setDescription in interface NameableData

Parameters:

description - The new description for the item

getExperiment

public ExperimentData getExperiment()

Get the experiment this root raw bioassay belongs to.

Hibernate: column

name="`experiment_id`" not-null="true" unique-key="RootRawBioAssay_uniquebioassay"

Hibernate: many-to-one

outer-join="false" update="false"

setExperiment

public void setExperiment(ExperimentData experiment)

getRawBioAssay

public RawBioAssayData getRawBioAssay()

Get the raw bioassay root raw bioassay is derived from.

Hibernate: column

name="`rawbioassay_id`" not-null="true" unique-key="RootRawBioAssay_uniquebioassay"

Hibernate: many-to-one

outer-join="false" update="false"

setRawBioAssay

public void setRawBioAssay(RawBioAssayData rawBioAssay)