net.sf.basedb.util.overview.validator
Class BioSourceValidator

java.lang.Object
  net.sf.basedb.util.overview.validator.BasicNodeValidator<I>
      net.sf.basedb.util.overview.validator.NameableNodeValidator<BioSource>
          net.sf.basedb.util.overview.validator.BioSourceValidator

All Implemented Interfaces:

NodeValidator<BioSource>

public class BioSourceValidator
extends NameableNodeValidator<BioSource>

Validator implementation for biosources. Validation rules:

• Missing item: Validator.MISSING_BIOSOURCE
• Access denied: Validator.DENIED_BIOSOURCE

Version:

2.10

Author:

Nicklas

Last modified

$Date: 2009-02-16 20:29:47 +0100 (Mon, 16 Feb 2009) $

Constructor Summary

BioSourceValidator()

Method Summary

protected Fix

getMissingItemFix(Node sampleNode) Subclasses should override this method if they have a suggessted fix for a missing item problem.

Methods inherited from class net.sf.basedb.util.overview.validator.NameableNodeValidator

postValidate

Methods inherited from class net.sf.basedb.util.overview.validator.BasicNodeValidator

getDeniedItemFix, postDeniedItem, postMissingItem, postValidateFolder, preDeniedItem, preMissingItem, preValidate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioSourceValidator

public BioSourceValidator()

Method Detail

getMissingItemFix

protected Fix getMissingItemFix(Node sampleNode)

Description copied from class: BasicNodeValidator

Subclasses should override this method if they have a suggessted fix for a missing item problem. The default implementation does nothing, but the following template may be usable by most subclasses:

                new Fix("Add item to parent", parentNode.getItem())
                

Specified by:

getMissingItemFix in class BasicNodeValidator<BioSource>

Returns:

Suggested fix is to add a biosource to the parent sample.