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java.lang.Object net.sf.basedb.util.export.spotdata.AbstractFieldConverter net.sf.basedb.util.export.spotdata.StandardFieldConverter
public class StandardFieldConverter
Default field converter implementation that works mainly by checking names and/or external id values of formulas, extra values, experimental factors etc.
Constructor Summary | |
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StandardFieldConverter(DbControl dc,
BioAssaySet source)
Create a new standard field converter. |
Method Summary | |
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AssayField |
getAssayField(String name,
boolean required)
Find an assay field. |
DynamicField |
getReporterField(String name,
boolean required)
Find a reporter dynamic field. |
DynamicField |
getSpotField(String name,
boolean required)
Find a spot dynamic field. |
Methods inherited from class net.sf.basedb.util.export.spotdata.AbstractFieldConverter |
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getAssayAnnotationField, getAssayPropertyField, getDbControl, getExperimentalFactorField, getExtraValueField, getFormulaField, getIntensityField, getRawDataProperty, getReporterProperty, getSnapshotManager, getSource, setSnapshotManager |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public StandardFieldConverter(DbControl dc, BioAssaySet source)
dc
- A DbControl to use for database accesssource
- The source bioassay setMethod Detail |
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public AssayField getAssayField(String name, boolean required)
name
- The name to findrequired
- If TRUE and no field is found this method will
throw an ItemNotFoundException
public DynamicField getReporterField(String name, boolean required)
name
- The name to findrequired
- If TRUE and no field is found this method will
throw an ItemNotFoundException
public DynamicField getSpotField(String name, boolean required)
name
- The name to findrequired
- If TRUE and no field is found this method will
throw an ItemNotFoundException
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