Opened 16 years ago

Closed 16 years ago

#1052 closed enhancement (fixed)

Core analysis plug-ins need to be aware of bioassaysets that use data in files

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: BASE 2.8
Component: coreplugins Version:
Keywords: Cc:

Description (last modified by Nicklas Nordborg)

This is related to #1029 and depends on #1050. All existing core plug-ins expect data to be found in the database. When #1050 is in place, they need to be aware of that there are bioassay sets that have data inside files. The plug-ins should not try to load the data from files. Instead their isInContext() method should be implemented in a way that hides the plug-in in those cases. The current core plugins are:

  • Base 1 executor
  • JEP extra value calculator
  • JEP filter
  • JEP intensity transformer
  • Lowess normalization
  • Median ratio normalization
  • BioAssaySet exporter

Change History (3)

comment:1 by Nicklas Nordborg, 16 years ago

Owner: changed from everyone to Nicklas Nordborg
Status: new → assigned

comment:2 by Nicklas Nordborg, 16 years ago

Description: modified (diff)

comment:3 by Nicklas Nordborg, 16 years ago

Resolution: → fixed
Status: assigned → closed

(In [4337]) Fixes #1052: Core analysis plug-ins need to be aware of bioassaysets that use data in files

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