Opened 14 years ago

Closed 14 years ago

#942 closed defect (fixed)

BioAssaySetExporter should export ratio values instead of log-ratio for MeV-format

Reported by: Nicklas Nordborg Owned by: everyone
Priority: major Milestone: BASE 2.6.1
Component: coreplugins Version:
Keywords: Cc:

Description

MeV expects ratio-values. Using the "Launch MeV" tool in BASE loads the bioassayset data into MeV with java webstart. The data export sends the log-ratio values to MeV but MeV seems to expect ratio-values. About half of the spots are grayed out in MeV because the have a negative "ratio". Clicking on a spot opens the "Spot information" (see attached file) dialog which reveals that the "Ratio" value is the same as the log-ratio that was exported from BASE.

Attachments (1)

mev.png (24.3 KB) - added by Nicklas Nordborg 14 years ago.
MeV: Spot information

Download all attachments as: .zip

Change History (2)

Changed 14 years ago by Nicklas Nordborg

Attachment: mev.png added

MeV: Spot information

comment:1 Changed 14 years ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

(In [4165]) Fixes #942: BioAssaySetExporter? should export ratio values instead of log-ratio for MeV-format

Note: See TracTickets for help on using tickets.