Opened 15 years ago
Closed 14 years ago
#639 closed task (fixed)
exportPureMatrix method
Reported by: | Peter Johansson | Owned by: | Jari Häkkinen |
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Priority: | minor | Milestone: | BASE 2.7.1 |
Component: | coreplugins | Version: | 2.7 |
Keywords: | Cc: |
Description (last modified by )
It would be useful to have a method exporting a BioAssaySet to pure matrix, in other words, a matrix with no additional header or reporter information. Each column in the matrix corresponds to a sample, and each row corresponds to a reporter.
Passed arguments may be a BioAssaySet (of course) and something holding the information what variable should be exported (e.g. ch1, ch2 or log2ratio).
Change History (14)
comment:1 Changed 15 years ago by
Status: | new → assigned |
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comment:2 Changed 15 years ago by
comment:3 Changed 15 years ago by
comment:5 Changed 15 years ago by
Milestone: | BASE 2.4 → BASE 2.5 |
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The interface of this method is not mature enough to be included in the 2.4 release.
comment:7 Changed 14 years ago by
Milestone: | BASE 2.5 → BASE 2.x+ |
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Owner: | Peter Johansson deleted |
Status: | assigned → new |
comment:8 Changed 14 years ago by
Milestone: | BASE 2.x+ → BASE 2.6 |
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comment:9 Changed 14 years ago by
Priority: | major → minor |
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comment:10 Changed 14 years ago by
Milestone: | BASE 2.6 → BASE 2.x+ |
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This ticket will remain at 2.x unless a proper specification is made.
comment:11 Changed 14 years ago by
Milestone: | BASE 2.x+ → BASE 2.7.1 |
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Owner: | set to Jari Häkkinen |
Status: | new → assigned |
Version: | trunk → 2.7 |
comment:12 Changed 14 years ago by
Description: | modified (diff) |
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Just a note to tell you all that I am working on this now.
comment:13 Changed 14 years ago by
comment:14 Changed 14 years ago by
Resolution: | → fixed |
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Status: | assigned → closed |
changeset:4318 adds functionality to export 2-channel data. ch1/ch2 ratios are exported for 2-channel data, and ch1 intensities are exported for 1-channel data.
The export is not available in the web interface it is merely a convenience export for other plug-ins.
This finalizes the changes made for now, request for improvements such as providing formulas to define what should be exported in the matrix must be made as new tickets or mailing list discussions.
(In [3509]) References #639. First non-tested non-generic version of the matrix export method.