Opened 16 years ago
Closed 15 years ago
#639 closed task (fixed)
exportPureMatrix method
| Reported by: | Peter Johansson | Owned by: | Jari Häkkinen |
|---|---|---|---|
| Priority: | minor | Milestone: | BASE 2.7.1 |
| Component: | coreplugins | Version: | 2.7 |
| Keywords: | Cc: |
Description (last modified by )
It would be useful to have a method exporting a BioAssaySet to pure matrix, in other words, a matrix with no additional header or reporter information. Each column in the matrix corresponds to a sample, and each row corresponds to a reporter.
Passed arguments may be a BioAssaySet (of course) and something holding the information what variable should be exported (e.g. ch1, ch2 or log2ratio).
Change History (14)
comment:1 Changed 16 years ago by
| Status: | new → assigned |
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comment:2 Changed 16 years ago by
comment:3 Changed 16 years ago by
comment:5 Changed 16 years ago by
| Milestone: | BASE 2.4 → BASE 2.5 |
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The interface of this method is not mature enough to be included in the 2.4 release.
comment:7 Changed 16 years ago by
| Milestone: | BASE 2.5 → BASE 2.x+ |
|---|---|
| Owner: | Peter Johansson deleted |
| Status: | assigned → new |
comment:8 Changed 15 years ago by
| Milestone: | BASE 2.x+ → BASE 2.6 |
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comment:9 Changed 15 years ago by
| Priority: | major → minor |
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comment:10 Changed 15 years ago by
| Milestone: | BASE 2.6 → BASE 2.x+ |
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This ticket will remain at 2.x unless a proper specification is made.
comment:11 Changed 15 years ago by
| Milestone: | BASE 2.x+ → BASE 2.7.1 |
|---|---|
| Owner: | set to Jari Häkkinen |
| Status: | new → assigned |
| Version: | trunk → 2.7 |
comment:12 Changed 15 years ago by
| Description: | modified (diff) |
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Just a note to tell you all that I am working on this now.
comment:13 Changed 15 years ago by
comment:14 Changed 15 years ago by
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
changeset:4318 adds functionality to export 2-channel data. ch1/ch2 ratios are exported for 2-channel data, and ch1 intensities are exported for 1-channel data.
The export is not available in the web interface it is merely a convenience export for other plug-ins.
This finalizes the changes made for now, request for improvements such as providing formulas to define what should be exported in the matrix must be made as new tickets or mailing list discussions.
(In [3509]) References #639. First non-tested non-generic version of the matrix export method.