Opened 18 years ago

Closed 18 years ago

#372 closed enhancement (fixed)

Check Affymetrix CEL files vs Affymetrix Array Design during file upload

Reported by: rocca@… Owned by: Nicklas Nordborg
Priority: major Milestone: BASE 2.4
Component: core Version:
Keywords: CEL files and ArrayDesign Cc:

Description

CEL files contains information about the ArrayDesign used to generated it. This information could be used to:

  • either autoselect the ArrayDesign (CDF file) when creating a new Raw bioassay
  • or check for consistency between CEL file and ArrayDesign selection

This check would be beneficial to avoid downstream Data manipulation failures (eg when using the RMA plugin)

Change History (9)

comment:1 by Nicklas Nordborg, 18 years ago

Component: web → core
Milestone: BASE 2.1 → BASE 2.x+

comment:2 by Jari Häkkinen, 18 years ago

The failure to establish the proper connection with cel's and cdf's affectes the RMAplugin: ​http://baseplugins.thep.lu.se/ticket/19

comment:3 by Nicklas Nordborg, 18 years ago

When the verification has been implemented it should no longer be possible to change the CDF file of an array design since that would undo the verification which some analysis plugin may depend on.

comment:4 by Jari Häkkinen, 18 years ago

Owner: changed from base to Jari Häkkinen

comment:5 by Jari Häkkinen, 18 years ago

Relates to ticket:435

comment:6 by Jari Häkkinen, 18 years ago

Milestone: BASE 2.x+ → BASE 2.4

comment:7 by Jari Häkkinen, 18 years ago

Milestone: BASE 2.4 → BASE 2.3

Milestone BASE 2.4 deleted

comment:8 by Nicklas Nordborg, 18 years ago

Owner: changed from Jari Häkkinen to Nicklas Nordborg
Status: new → assigned

comment:9 by Nicklas Nordborg, 18 years ago

Resolution: → fixed
Status: assigned → closed

(In [3476]) Fixes #372

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