Opened 6 years ago

Closed 6 years ago

#2122 closed enhancement (fixed)

Item overview should load more child derived and raw bioassays from extracts

Reported by: Nicklas Nordborg Owned by: everyone
Priority: major Milestone: BASE 3.12.3
Component: core Version:
Keywords: Cc:


The current structure in BASE allows an Extract to be linked directly from a Derived bioassay and Raw bioassay. There is also the possibility that the same extract is linked via a physical bioassay.

In the "Item overview" the link to the extract is loaded if starting at the raw/derived bioassay level and moving upwards. If starting from the extract the link is only visible if there is no alternate route via a physical bioassay. If there is an alternate route the overview will only show that which may introduce a lot of intermediate levels that are of minor interest.

For example, in Reggie we have a link from Library (extract) -> Merged sequences (derived bioassay) and an alternate route via: Library -> Pooled library -> Pooled library aliquot -> Flow cell -> Sequencing run -> Demuxed sequences -> Merged sequences

It is 6 steps instead of 1!!

The item overview should be able to load the direct link to a derived or raw bioassay. It should only load the top-most bioassay (eg. it should not load derived bioassays that has a parent bioassay leading to the same extract).

Change History (1)

comment:1 by Nicklas Nordborg, 6 years ago

Resolution: fixed
Status: newclosed

(In [7490]) Fixes #2122: Item overview should load more child derived and raw bioassays from extracts

The direct links should now be loaded also for bioassays with a parent as long as that parent doesn't lead to the originating extract. Only the top-most derived bioassay is loaded and directly and children to that are loaded as normal.

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