Opened 10 years ago

Closed 10 years ago

Last modified 9 years ago

#1942 closed enhancement (fixed)

Upgrade 3-rd party libraries

Reported by: Nicklas Nordborg Owned by: everyone
Priority: minor Milestone: BASE 3.6
Component: build Version:
Keywords: Cc:

Description

It's time for this again. Last time was #1809.

Change History (13)

comment:1 by Nicklas Nordborg, 10 years ago

Component: core → build

comment:2 by Nicklas Nordborg, 10 years ago

(In [6899]) References #1942: Upgrade 3-rd party libraries

Updated Hibernate to 4.3.9.

comment:3 by Nicklas Nordborg, 10 years ago

(In [6900]) References #1942: Upgrade 3-rd party libraries

Updated JDOM to 2.0.6

comment:4 by Nicklas Nordborg, 10 years ago

(In [6901]) References #1942: Upgrade 3-rd party libraries

Updated MySQL connector to 5.1.35

comment:5 by Nicklas Nordborg, 10 years ago

(In [6902]) References #1942: Upgrade 3-rd party libraries

Updated PostgreSQL JDBC driver to 9.4-1201.jdbc41

comment:6 by Nicklas Nordborg, 10 years ago

(In [6903]) References #1942: Upgrade 3-rd party libraries

Updated JFreeChart to 1.0.19

comment:7 by Nicklas Nordborg, 10 years ago

(In [6904]) References #1942: Upgrade 3-rd party libraries

Updated Apache HttpComponents to 4.4.1

comment:8 by Nicklas Nordborg, 10 years ago

(In [6905]) References #1942: Upgrade 3-rd party libraries

Updated Apache Commons Email to 1.3.3 and JavaMail to 1.5.3

comment:9 by Nicklas Nordborg, 10 years ago

(In [6906]) References #1942: Upgrade 3-rd party libraries

Updated jBCrypt to 0.4.

comment:10 by Nicklas Nordborg, 10 years ago

(In [6907]) References #1942: Upgrade 3-rd party libraries

Updated JavaSysMon to 0.3.5

comment:11 by Nicklas Nordborg, 10 years ago

Resolution: → fixed
Status: new → closed

Closing this ticket for now.

comment:12 by Nicklas Nordborg, 10 years ago

(In [6908]) References #1942: Store experimental factor values as part experiments

Added RootRawBioAssayData class. A database schema update is moving over existing raw bioassays to the new table and then drops the old table.

Some old mappings have been kept and this change doesn't introduce any incompatibility in the public API, but the new class is still only used for the link and not for annotations/experimental factors.

Version 0, edited 10 years ago by Nicklas Nordborg (next)

comment:13 by Nicklas Nordborg, 9 years ago

(In [6970]) References #1942: Upgrade 3-rd party libraries

Found an incorrect file reference to the Hibernate JAR file.

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