Opened 13 years ago
Closed 13 years ago
#1610 closed defect (fixed)
Base1PluginExecutor tries to remap raw data associations for file-only platforms
Reported by: | Nicklas Nordborg | Owned by: | everyone |
---|---|---|---|
Priority: | major | Milestone: | BASE 2.17.2 |
Component: | coreplugins | Version: | |
Keywords: | Cc: |
Description
This was discovered when running Merge BioAssay
on data originating from Affymetrix platform.
See http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg02009.html for more information.
The stacktrace:
net.sf.basedb.core.BaseException: Raw data for raw data type: Affymetrix is not stored in the database. at net.sf.basedb.core.DynamicSpotQuery.joinRawData(DynamicSpotQuery.java:261) at net.sf.basedb.util.importer.spotdata.BaseFileImporter.createChildRawDataMapping(BaseFileImporter.java:510) at net.sf.basedb.util.importer.spotdata.BaseFileImporter.doImport(BaseFileImporter.java:346) at net.sf.basedb.plugins.Base1PluginExecuter.importData(Base1PluginExecuter.java:1471) at net.sf.basedb.plugins.Base1PluginExecuter.run(Base1PluginExecuter.java:774) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:116) at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:510) at java.lang.Thread.run(Thread.java:636)
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(In [5639]) Fixes #1610: Base1PluginExecutor tries to remap raw data associations for file-only platforms
I hope this fixes the problem. We don't have the kind of data that allows us to create a test case for this.