#1451 closed task (fixed)
Implement BFS importer for spot data
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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Priority: | critical | Milestone: | BASE 2.15 |
Component: | coreplugins | Version: | |
Keywords: | Cc: |
Description
The implementation of the plug-in should build on/use the generic parsers that are implemented as part of #1444.
This ticket in itself can also be split in two parts. First, a working import implementation (not a plug-in) is created, then a plug-in is created that uses the importer.
Change History (11)
comment:1 by , 15 years ago
Owner: | changed from | to
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Status: | new → assigned |
comment:2 by , 15 years ago
comment:3 by , 15 years ago
comment:4 by , 15 years ago
comment:5 by , 15 years ago
comment:6 by , 15 years ago
comment:7 by , 15 years ago
comment:8 by , 15 years ago
comment:9 by , 15 years ago
Resolution: | → fixed |
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Status: | assigned → closed |
The importer can now import spot data and extra files. Support for other types of data (extra values, reporter lists, etc.) are added when needed by a plug-in use-case. New tickets should be created for this.
comment:10 by , 15 years ago
comment:11 by , 15 years ago
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(In [5227]) References #1451: Implement BFS importer for spot data
First version of the importer. It can import serial/matrix BFS with data in the same datacube. There is code also for remapping position/reporter and parents assays into a new datacube, but the test code needs to be extended with those two cases. I have currently "hijacked" the BASEfile exporter test case for both the BFS export and import tests.
I am thinking that maybe we need a better way to handle complex tests like this since it is rally hard for every test case to setup a complete experiment of it's own.