Opened 15 years ago

Last modified 14 years ago

#1402 new enhancement

New Affymetrix CEL file support

Reported by: base Owned by: everyone
Priority: minor Milestone: BASE Future Release
Component: core Version:
Keywords: Cc:


New is a "generic" CEL data file format, for which BASE Affy import plugin should be updated:

Change History (3)

comment:1 by Nicklas Nordborg, 15 years ago

Component: webcore
Priority: majorminor
Type: defectenhancement

comment:2 by Nicklas Nordborg, 15 years ago

Milestone: BASE 2.x+

If we decide to upgrade to a newer Fusion SDK I think we should skip the modifications we made to the version BASE is currently using. Ok... it is nice to have stream-support, but this is only working for the older text-based CEL files. Files in the binary formats still needs to be copied before we can use them in the Fusion SDK. I don't think there is much reason to keep on modifying the newer Fusion SDK just to get a feature that is not really needed.

But... no work is going to be done on this ticket unless someone can provide us with some test data files in the new format. We currently have files in CEL version 3 (text) and version 4 (binary) formats but not in the generic "Command Console" format.

comment:3 by Nicklas Nordborg, 14 years ago

See also this thread on the mailing list:

I also found a site which has a lot of CDF (and other) files: Could be useful for testing.

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