Opened 15 years ago
Closed 15 years ago
#1379 closed enhancement (fixed)
Change default minimum intensity value and add support for 0=all blocks to median ratio normalizer
Reported by: | Jari Häkkinen | Owned by: | Nicklas Nordborg |
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Priority: | major | Milestone: | BASE 2.14 |
Component: | coreplugins | Version: | |
Keywords: | Cc: |
Description
In BASE2 plugin 'Normalization: Median ratio', parameter Blockgroup size can not be set to 0 (must be 1 or larger).
This should be changed so that Blockgroup size = 0 = use all blocks as a single group (just as it works in BASE2 plugin 'Normalization: Lowess').
Ideally, setting Blockgroup size = 0 should enable the plugin to run irrespectively of whether block information is available for bioassays. Such as in the case where connection to rawdata table is lost, e.g., after running BASE1 plug-in virtual array.
Also, the default value for Minimum intensity should be changed to 0 since it behaves like a filter. The default value should keep all data.
Change History (3)
comment:1 by , 15 years ago
Owner: | changed from | to
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Status: | new → assigned |
comment:2 by , 15 years ago
Summary: | Suggestions for 'Normalization: Median ratio' plug-in improvements → Change default minimum intensity value and add support for 0=all blocks to median ratio normalizer |
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comment:3 by , 15 years ago
Resolution: | → fixed |
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Status: | assigned → closed |
(In [5103]) Fixes #1379: Change default minimum intensity value and add support for 0=all blocks to median ratio normalizer