Opened 13 years ago

Closed 13 years ago

#1237 closed task (fixed)

BioAssaySetExporter should attach generated files to the bioassayset

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: BASE 2.11
Component: coreplugins Version:
Keywords: Cc:

Description (last modified by Nicklas Nordborg)

The main reason is that we want to change the MeV launcher so that it requires a pre-generated MeV file instead of doing a new export every time. This should considerably increase performance since the MeV file generation usually takes a lot of time. See http://baseplugins.thep.lu.se/ticket/162

What we need to do:

  • Define a some new data file types: MeV, Serial BASEFile, Matrix BASE file.
  • Implement a DataFileValidator? and DataFileMetadataReader? for BASEFile:s
  • Add code in the BioAssaySetExporter? that attaches exported files to the bioassay set. This should be an option that default to true. If an older file is already attached the plug-in might also ask if the existing file should be deleted (from the BASE file system) or not.

Change History (5)

comment:1 Changed 13 years ago by Nicklas Nordborg

Owner: changed from everyone to Nicklas Nordborg
Status: newassigned

comment:2 Changed 13 years ago by Nicklas Nordborg

Description: modified (diff)

comment:3 Changed 13 years ago by Nicklas Nordborg

(In [4791]) References #1237: BioAssaySetExporter? should attach generated files to the bioassayset

The basic functionality is in place.

comment:4 Changed 13 years ago by Nicklas Nordborg

(In [4792]) References #1237: BioAssaySetExporter? should attach generated files to the bioassayset

Must have WRITE permission on bioassay sets, which in reality means USE permission on experiments.

comment:5 Changed 13 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed
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