#117 closed defect (fixed)
Failure to Create Raw BioAssay (tested on 2 different installs: linux + windows)
Reported by: | Owned by: | Johan Enell | |
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Priority: | major | Milestone: | BASE 2.0 RC2 |
Component: | web | Version: | RC1 |
Keywords: | Cc: | oyeniran@… |
Description
Dear BASE
Attemping to create a Raw Bioassay objects results in the following error: (Note: all others objects where created with no pb, and the hybridization was using a affy type of array, if this is of importance at all)
Cheers
Philippe
java.lang.NullPointerException on page /base/views/rawbioassays/edit_rawbioassay.jsp
...at java.util.TreeMap.compare(TreeMap.java:1093) ...at java.util.TreeMap.getEntry(TreeMap.java:347) ...at java.util.TreeMap.get(TreeMap.java:265) ...at RawDataTypes.getRawDataType(RawDataTypes.java:133)
...at org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp._jspService(org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp:137) ...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:332) ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314) ...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:264) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:72) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) ...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) ...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) ...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) ...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) ...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:667) ...at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80) ...at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) ...at java.lang.Thread.run(Thread.java:595)
Change History (6)
comment:1 by , 19 years ago
Owner: | changed from | to
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comment:2 by , 19 years ago
Status: | new → assigned |
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comment:3 by , 19 years ago
Owner: | changed from | to
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Status: | assigned → new |
comment:4 by , 19 years ago
Resolution: | → fixed |
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Status: | new → closed |
The method RawDataTypes.getRawDataType(String id) threw an exception for id = null instead of returning null.
comment:5 by , 19 years ago
Milestone: | → BASE 2.0 RC2 |
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comment:6 by , 19 years ago
The demo server has been upgraded and should not show the problem anymore. You need to upgrade your personal servers to resolve this problem (donwload new package, no need to reinitialize the database).
Creating a new 'Experiment' or 'Raw Bioassay' fails (menu File -> New -> Experiment (or Raw Bioassay)).