#117 closed defect (fixed)
Failure to Create Raw BioAssay (tested on 2 different installs: linux + windows)
Reported by: | Owned by: | Johan Enell | |
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Priority: | major | Milestone: | BASE 2.0 RC2 |
Component: | web | Version: | RC1 |
Keywords: | Cc: | oyeniran@… |
Description
Dear BASE
Attemping to create a Raw Bioassay objects results in the following error: (Note: all others objects where created with no pb, and the hybridization was using a affy type of array, if this is of importance at all)
Cheers
Philippe
java.lang.NullPointerException? on page /base/views/rawbioassays/edit_rawbioassay.jsp
...at java.util.TreeMap?.compare(TreeMap?.java:1093) ...at java.util.TreeMap?.getEntry(TreeMap?.java:347) ...at java.util.TreeMap?.get(TreeMap?.java:265) ...at RawDataTypes?.getRawDataType(RawDataTypes?.java:133)
...at org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp._jspService(org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp:137) ...at org.apache.jasper.runtime.HttpJspBase?.service(HttpJspBase?.java:97) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.jasper.servlet.JspServletWrapper?.service(JspServletWrapper?.java:332) ...at org.apache.jasper.servlet.JspServlet?.serviceJspFile(JspServlet?.java:314) ...at org.apache.jasper.servlet.JspServlet?.service(JspServlet?.java:264) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:252) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter?.doFilter(CharacterEncodingFilter?.java:72) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:202) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at org.apache.catalina.core.StandardWrapperValve?.invoke(StandardWrapperValve?.java:213) ...at org.apache.catalina.core.StandardContextValve?.invoke(StandardContextValve?.java:178) ...at org.apache.catalina.core.StandardHostValve?.invoke(StandardHostValve?.java:126) ...at org.apache.catalina.valves.ErrorReportValve?.invoke(ErrorReportValve?.java:105) ...at org.apache.catalina.core.StandardEngineValve?.invoke(StandardEngineValve?.java:107) ...at org.apache.catalina.connector.CoyoteAdapter?.service(CoyoteAdapter?.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:667) ...at org.apache.tomcat.util.net.PoolTcpEndpoint?.processSocket(PoolTcpEndpoint?.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread?.runIt(LeaderFollowerWorkerThread?.java:80) ...at org.apache.tomcat.util.threads.ThreadPool?$ControlRunnable?.run(ThreadPool?.java:684) ...at java.lang.Thread.run(Thread.java:595)
Change History (6)
comment:1 Changed 18 years ago by
Owner: | changed from Gregory Vincic to Jari Häkkinen |
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comment:2 Changed 18 years ago by
Status: | new → assigned |
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comment:3 Changed 18 years ago by
Owner: | changed from Jari Häkkinen to Johan Enell |
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Status: | assigned → new |
comment:4 Changed 18 years ago by
Resolution: | → fixed |
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Status: | new → closed |
The method RawDataTypes?.getRawDataType(String id) threw an exception for id = null instead of returning null.
comment:5 Changed 18 years ago by
Milestone: | → BASE 2.0 RC2 |
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comment:6 Changed 18 years ago by
The demo server has been upgraded and should not show the problem anymore. You need to upgrade your personal servers to resolve this problem (donwload new package, no need to reinitialize the database).
Creating a new 'Experiment' or 'Raw Bioassay' fails (menu File -> New -> Experiment (or Raw Bioassay)).