Opened 16 years ago

Closed 16 years ago

Last modified 16 years ago

#117 closed defect (fixed)

Failure to Create Raw BioAssay (tested on 2 different installs: linux + windows)

Reported by: rocca@… Owned by: Johan Enell
Priority: major Milestone: BASE 2.0 RC2
Component: web Version: RC1
Keywords: Cc: oyeniran@…

Description

Dear BASE

Attemping to create a Raw Bioassay objects results in the following error: (Note: all others objects where created with no pb, and the hybridization was using a affy type of array, if this is of importance at all)

Cheers

Philippe

java.lang.NullPointerException? on page /base/views/rawbioassays/edit_rawbioassay.jsp

...at java.util.TreeMap?.compare(TreeMap?.java:1093) ...at java.util.TreeMap?.getEntry(TreeMap?.java:347) ...at java.util.TreeMap?.get(TreeMap?.java:265) ...at RawDataTypes?.getRawDataType(RawDataTypes?.java:133)

...at org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp._jspService(org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp:137) ...at org.apache.jasper.runtime.HttpJspBase?.service(HttpJspBase?.java:97) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.jasper.servlet.JspServletWrapper?.service(JspServletWrapper?.java:332) ...at org.apache.jasper.servlet.JspServlet?.serviceJspFile(JspServlet?.java:314) ...at org.apache.jasper.servlet.JspServlet?.service(JspServlet?.java:264) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:252) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter?.doFilter(CharacterEncodingFilter?.java:72) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:202) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at org.apache.catalina.core.StandardWrapperValve?.invoke(StandardWrapperValve?.java:213) ...at org.apache.catalina.core.StandardContextValve?.invoke(StandardContextValve?.java:178) ...at org.apache.catalina.core.StandardHostValve?.invoke(StandardHostValve?.java:126) ...at org.apache.catalina.valves.ErrorReportValve?.invoke(ErrorReportValve?.java:105) ...at org.apache.catalina.core.StandardEngineValve?.invoke(StandardEngineValve?.java:107) ...at org.apache.catalina.connector.CoyoteAdapter?.service(CoyoteAdapter?.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:667) ...at org.apache.tomcat.util.net.PoolTcpEndpoint?.processSocket(PoolTcpEndpoint?.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread?.runIt(LeaderFollowerWorkerThread?.java:80) ...at org.apache.tomcat.util.threads.ThreadPool?$ControlRunnable?.run(ThreadPool?.java:684) ...at java.lang.Thread.run(Thread.java:595)

Change History (6)

comment:1 Changed 16 years ago by Jari Häkkinen

Owner: changed from Gregory Vincic to Jari Häkkinen

comment:2 Changed 16 years ago by Jari Häkkinen

Status: newassigned

comment:3 Changed 16 years ago by Jari Häkkinen

Owner: changed from Jari Häkkinen to Johan Enell
Status: assignednew

Creating a new 'Experiment' or 'Raw Bioassay' fails (menu File -> New -> Experiment (or Raw Bioassay)).

comment:4 Changed 16 years ago by Johan Enell

Resolution: fixed
Status: newclosed

The method RawDataTypes?.getRawDataType(String id) threw an exception for id = null instead of returning null.

comment:5 Changed 16 years ago by Johan Enell

Milestone: BASE 2.0 RC2

comment:6 Changed 16 years ago by Jari Häkkinen

The demo server has been upgraded and should not show the problem anymore. You need to upgrade your personal servers to resolve this problem (donwload new package, no need to reinitialize the database).

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