Failure to Create Raw BioAssay (tested on 2 different installs: linux + windows)

[rocca@…]

Dear BASE

Attemping to create a Raw Bioassay objects results in the following error: (Note: all others objects where created with no pb, and the hybridization was using a affy type of array, if this is of importance at all)

Cheers

Philippe

java.lang.NullPointerException? on page /base/views/rawbioassays/edit_rawbioassay.jsp

...at java.util.TreeMap?.compare(TreeMap?.java:1093) ...at java.util.TreeMap?.getEntry(TreeMap?.java:347) ...at java.util.TreeMap?.get(TreeMap?.java:265) ...at RawDataTypes?.getRawDataType(RawDataTypes?.java:133)

...at org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp._jspService(org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp:137) ...at org.apache.jasper.runtime.HttpJspBase?.service(HttpJspBase?.java:97) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.jasper.servlet.JspServletWrapper?.service(JspServletWrapper?.java:332) ...at org.apache.jasper.servlet.JspServlet?.serviceJspFile(JspServlet?.java:314) ...at org.apache.jasper.servlet.JspServlet?.service(JspServlet?.java:264) ...at javax.servlet.http.HttpServlet?.service(HttpServlet?.java:802) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:252) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter?.doFilter(CharacterEncodingFilter?.java:72) ...at org.apache.catalina.core.ApplicationFilterChain?.internalDoFilter(ApplicationFilterChain?.java:202) ...at org.apache.catalina.core.ApplicationFilterChain?.doFilter(ApplicationFilterChain?.java:173) ...at org.apache.catalina.core.StandardWrapperValve?.invoke(StandardWrapperValve?.java:213) ...at org.apache.catalina.core.StandardContextValve?.invoke(StandardContextValve?.java:178) ...at org.apache.catalina.core.StandardHostValve?.invoke(StandardHostValve?.java:126) ...at org.apache.catalina.valves.ErrorReportValve?.invoke(ErrorReportValve?.java:105) ...at org.apache.catalina.core.StandardEngineValve?.invoke(StandardEngineValve?.java:107) ...at org.apache.catalina.connector.CoyoteAdapter?.service(CoyoteAdapter?.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:667) ...at org.apache.tomcat.util.net.PoolTcpEndpoint?.processSocket(PoolTcpEndpoint?.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread?.runIt(LeaderFollowerWorkerThread?.java:80) ...at org.apache.tomcat.util.threads.ThreadPool?$ControlRunnable?.run(ThreadPool?.java:684) ...at java.lang.Thread.run(Thread.java:595)

[Jari Häkkinen]

Creating a new 'Experiment' or 'Raw Bioassay' fails (menu File -> New -> Experiment (or Raw Bioassay)).

[Johan Enell]

The method RawDataTypes?.getRawDataType(String id) threw an exception for id = null instead of returning null.

[Jari Häkkinen]

The demo server has been upgraded and should not show the problem anymore. You need to upgrade your personal servers to resolve this problem (donwload new package, no need to reinitialize the database).