Opened 18 years ago

Closed 18 years ago

Last modified 18 years ago

#117 closed defect (fixed)

Failure to Create Raw BioAssay (tested on 2 different installs: linux + windows)

Reported by: rocca@… Owned by: Johan Enell
Priority: major Milestone: BASE 2.0 RC2
Component: web Version: RC1
Keywords: Cc: oyeniran@…



Attemping to create a Raw Bioassay objects results in the following error: (Note: all others objects where created with no pb, and the hybridization was using a affy type of array, if this is of importance at all)



java.lang.NullPointerException on page /base/views/rawbioassays/edit_rawbioassay.jsp java.util.TreeMap.getEntry( java.util.TreeMap.get( RawDataTypes.getRawDataType( org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp._jspService(org.apache.jsp.views.rawbioassays.edit_005frawbioassay_jsp:137) org.apache.jasper.runtime.HttpJspBase.service( javax.servlet.http.HttpServlet.service( org.apache.jasper.servlet.JspServletWrapper.service( org.apache.jasper.servlet.JspServlet.serviceJspFile( org.apache.jasper.servlet.JspServlet.service( javax.servlet.http.HttpServlet.service( org.apache.catalina.core.ApplicationFilterChain.internalDoFilter( org.apache.catalina.core.ApplicationFilterChain.doFilter( net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter( org.apache.catalina.core.ApplicationFilterChain.internalDoFilter( org.apache.catalina.core.ApplicationFilterChain.doFilter( org.apache.catalina.core.StandardWrapperValve.invoke( org.apache.catalina.core.StandardContextValve.invoke( org.apache.catalina.core.StandardHostValve.invoke( org.apache.catalina.valves.ErrorReportValve.invoke( org.apache.catalina.core.StandardEngineValve.invoke( org.apache.catalina.connector.CoyoteAdapter.service( org.apache.coyote.http11.Http11Processor.process( org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection( org.apache.tomcat.util.threads.ThreadPool$

Change History (6)

comment:1 by Jari Häkkinen, 18 years ago

Owner: changed from Gregory Vincic to Jari Häkkinen

comment:2 by Jari Häkkinen, 18 years ago

Status: newassigned

comment:3 by Jari Häkkinen, 18 years ago

Owner: changed from Jari Häkkinen to Johan Enell
Status: assignednew

Creating a new 'Experiment' or 'Raw Bioassay' fails (menu File -> New -> Experiment (or Raw Bioassay)).

comment:4 by Johan Enell, 18 years ago

Resolution: fixed
Status: newclosed

The method RawDataTypes.getRawDataType(String id) threw an exception for id = null instead of returning null.

comment:5 by Johan Enell, 18 years ago

Milestone: BASE 2.0 RC2

comment:6 by Jari Häkkinen, 18 years ago

The demo server has been upgraded and should not show the problem anymore. You need to upgrade your personal servers to resolve this problem (donwload new package, no need to reinitialize the database).

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