Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter
As an example if a BASE1-plugin asks for 'geneSymbol' the generated BASEFile has a 'symbol' column.
The root cause of the problem seems to be the hardcoded mappings in Base1PluginExecuter.loadNameMap() method. All BASE1/BASE2 differences should use formulas. But because of the way the hardcoded mappings are implemented they override any formulas with the same name. Eg. The hardcoded mapping for 'geneSymbol' is used even if there is a formula for 'geneSymbol'.