Opened 16 years ago

Closed 16 years ago

#1124 closed defect (fixed)

Base1PluginExecuter fails to import lines with empty fields

Reported by: Jari Häkkinen Owned by: Nicklas Nordborg
Priority: critical Milestone: BASE 2.8.2
Component: coreplugins Version:
Keywords: Cc:

Description

I have problems importing BASEFiles that are a mix of serial and matrix formats. The first part is serial assays and in the end many assays are in matrix format. When the matrix contains empty fields the importer part of Base1PluginExecuter fails skipping the rest of the line with empty fields.

Change History (8)

comment:1 by Jari Häkkinen, 16 years ago

Status: new → assigned

comment:2 by Jari Häkkinen, 16 years ago

(In [4529]) Addresses #1124. The index counter was not updated properly for number format exceptions.

comment:3 by Nicklas Nordborg, 16 years ago

Resolution: → fixed
Status: assigned → closed

(In [4530]) Fixes #1124: Base1PluginExecuter fails to import lines with empty fields

comment:4 by Nicklas Nordborg, 16 years ago

Resolution: fixed
Status: closed → reopened

There is also a similar problem with extra values being skipped if there are empty (or non-numeric) intensity values.

comment:5 by Nicklas Nordborg, 16 years ago

Owner: changed from Jari Häkkinen to Nicklas Nordborg
Status: reopened → new

comment:6 by Nicklas Nordborg, 16 years ago

Status: new → assigned

comment:7 by Nicklas Nordborg, 16 years ago

(In [4531]) References #1124: Base1PluginExecuter fails to import lines with empty fields

Spots are only inserted if all channels have a valid value. Extra values are only inserted if the spot is inserted. Added test case with BASEFile in matrix format and with extra values.

comment:8 by Nicklas Nordborg, 16 years ago

Resolution: → fixed
Status: assigned → closed
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