Opened 13 years ago

Closed 13 years ago

#1124 closed defect (fixed)

Base1PluginExecuter fails to import lines with empty fields

Reported by: Jari Häkkinen Owned by: Nicklas Nordborg
Priority: critical Milestone: BASE 2.8.2
Component: coreplugins Version:
Keywords: Cc:

Description

I have problems importing BASEFiles that are a mix of serial and matrix formats. The first part is serial assays and in the end many assays are in matrix format. When the matrix contains empty fields the importer part of Base1PluginExecuter fails skipping the rest of the line with empty fields.

Change History (8)

comment:1 Changed 13 years ago by Jari Häkkinen

Status: newassigned

comment:2 Changed 13 years ago by Jari Häkkinen

(In [4529]) Addresses #1124. The index counter was not updated properly for number format exceptions.

comment:3 Changed 13 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

(In [4530]) Fixes #1124: Base1PluginExecuter fails to import lines with empty fields

comment:4 Changed 13 years ago by Nicklas Nordborg

Resolution: fixed
Status: closedreopened

There is also a similar problem with extra values being skipped if there are empty (or non-numeric) intensity values.

comment:5 Changed 13 years ago by Nicklas Nordborg

Owner: changed from Jari Häkkinen to Nicklas Nordborg
Status: reopenednew

comment:6 Changed 13 years ago by Nicklas Nordborg

Status: newassigned

comment:7 Changed 13 years ago by Nicklas Nordborg

(In [4531]) References #1124: Base1PluginExecuter fails to import lines with empty fields

Spots are only inserted if all channels have a valid value. Extra values are only inserted if the spot is inserted. Added test case with BASEFile in matrix format and with extra values.

comment:8 Changed 13 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed
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