Package net.sf.basedb.util.overview.validator

Class ArrayDesignValidator

java.lang.Object

net.sf.basedb.util.overview.validator.BasicNodeValidator<I>

net.sf.basedb.util.overview.validator.NameableNodeValidator<ArrayDesign>

net.sf.basedb.util.overview.validator.ArrayDesignValidator

All Implemented Interfaces:

NodeValidator<ArrayDesign>

public class ArrayDesignValidator
extends NameableNodeValidator<ArrayDesign>

Validator implementation for array designs. Validation rules:

• Missing item: Validator.MISSING_ARRAYDESIGN
• Access denied: Validator.DENIED_ARRAYDESIGN
• Non-default array design: Validator.NONDEFAULT_ARRAYDESIGN
• Non-matching array design: Validator.NONMATHCING_ARRAYDESIGN
• Use of multiple array design in an experiment: Validator.MULTIPLE_ARRAYDESIGNS

Version:

2.10

Author:

Nicklas

Last modified

$Date: 2015-10-02 11:40:02 +0200 (fr, 02 okt 2015) $

Constructor Summary

Constructors

Constructor	Description
ArrayDesignValidator()

Method Summary

Modifier and Type	Method	Description
private void	checkExperimentArrayDesign(DbControl dc, OverviewContext context, Node parentNode, ArrayDesign design)	Check if an experiment has used more than one array design.
protected Fix	getMissingItemFix(DbControl dc, Node parentNode)	The suggested fix is to add an array design to the raw bioassay.
void	postValidate(DbControl dc, OverviewContext context, Node node, Node parentNode)	Do nothing.
boolean	preMissingItem(DbControl dc, OverviewContext context, Node parentNode)	Submits the BasicNodeValidator.ruleMissing validator to the context as a failure unless it is null.

Methods inherited from class net.sf.basedb.util.overview.validator.BasicNodeValidator

getDeniedItemFix, postDeniedItem, postMissingItem, postValidateFolder, preDeniedItem, preValidate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ArrayDesignValidator

public ArrayDesignValidator()

Method Details

postValidate

public void postValidate(DbControl dc,
 OverviewContext context,
 Node node,
 Node parentNode)

Description copied from class: BasicNodeValidator

Do nothing. Subclasses should override this method if they need more validation for an existing and accessible item.

Specified by:

postValidate in interface NodeValidator<ArrayDesign>

Overrides:

postValidate in class NameableNodeValidator<ArrayDesign>

Parameters:

dc - A DbControl to use if the validation needs to access the database

context - The current overview context

node - The node object that represents item

parentNode - The parent node that is linked with the item

preMissingItem

public boolean preMissingItem(DbControl dc,
 OverviewContext context,
 Node parentNode)

Description copied from class: BasicNodeValidator

Submits the BasicNodeValidator.ruleMissing validator to the context as a failure unless it is null.

Specified by:

preMissingItem in interface NodeValidator<ArrayDesign>

Overrides:

preMissingItem in class BasicNodeValidator<ArrayDesign>

Parameters:

dc - A DbControl to use if the validation needs to access the database

context - The current overview context

parentNode - The parent node that is missing the item

Returns:

Always false

getMissingItemFix

protected Fix getMissingItemFix(DbControl dc,
 Node parentNode)

The suggested fix is to add an array design to the raw bioassay.

Specified by:

getMissingItemFix in class BasicNodeValidator<ArrayDesign>

checkExperimentArrayDesign

private void checkExperimentArrayDesign(DbControl dc,
 OverviewContext context,
 Node parentNode,
 ArrayDesign design)

Check if an experiment has used more than one array design. The context cache keep a Set with all arraydesign we have seen so for for a given experiment (including null)