Package net.sf.basedb.util.overview.loader

Class ExperimentLoader

java.lang.Object

net.sf.basedb.util.overview.loader.AbstractNodeLoader<I>

net.sf.basedb.util.overview.loader.BasicItemNodeLoader<Experiment>

net.sf.basedb.util.overview.loader.ExperimentLoader

All Implemented Interfaces:

NodeLoader<Experiment>

public class ExperimentLoader
extends BasicItemNodeLoader<Experiment>

Node loader implementation for experiments. An experiment is the endpoint of the forward-direction. The reverse direction goes to the RawBioAssay:s included in the experiment.

Version:

2.10

Author:

Nicklas

Last modified

$Date: 2015-10-01 11:37:58 +0200 (to, 01 okt 2015) $

Field Summary

Fields inherited from class net.sf.basedb.util.overview.loader.BasicItemNodeLoader

ALLOW_ROOT_NODE, allowAsRootNode, DENY_ROOT_NODE, factoryKey, nameGenerator

Constructor Summary

Constructors

Constructor	Description
ExperimentLoader()

Method Summary

Modifier and Type	Method	Description
Node	createForwardNode(DbControl dc, OverviewContext context, Node rawBioAssayNode)	Create property-loading experiment nodes from a given rawbioassay node.
protected void	loadPropertyChildNodes(DbControl dc, OverviewContext context, Node experimentNode)	Load property nodes for an experiment: Experimental factors: ExperimentalFactorLoader.createPropertyNode(DbControl, OverviewContext, Node) Annotations: AnnotationLoader.createPropertyNode(DbControl, OverviewContext, Node)
protected void	loadReverseChildNodes(DbControl dc, OverviewContext context, Node experimentNode)	Loads the root raw bioassay nodes that are part of this experiment

Methods inherited from class net.sf.basedb.util.overview.loader.BasicItemNodeLoader

createItemNode, createRootNode, getNodeFactory, getNodeFactory, getNodeLoader, getNodeLoaderFactory, getNodeNameGenerator, getNodeValidator, getNodeValidatorFactory, postValidateFolder

Methods inherited from class net.sf.basedb.util.overview.loader.AbstractNodeLoader

createPropertyNode, createReverseNode, loadChildNodes, loadChildNodesOfFolderNode, loadChildNodesOfItemNode, loadForwardChildNodes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExperimentLoader

public ExperimentLoader()

Method Details

createForwardNode

public Node createForwardNode(DbControl dc,
 OverviewContext context,
 Node rawBioAssayNode)

Create property-loading experiment nodes from a given rawbioassay node. The returned node is a folder-type node containing item nodes for each experiment were the raw bioassay is used.

Specified by:

createForwardNode in interface NodeLoader<Experiment>

Overrides:

createForwardNode in class AbstractNodeLoader<Experiment>

Parameters:

dc - The DbControl to use for database access

context - The overview context

rawBioAssayNode - The parent node

Returns:

The folder node for the experiments

loadPropertyChildNodes

protected void loadPropertyChildNodes(DbControl dc,
 OverviewContext context,
 Node experimentNode)

Load property nodes for an experiment:

• Experimental factors: ExperimentalFactorLoader.createPropertyNode(DbControl, OverviewContext, Node)
• Annotations: AnnotationLoader.createPropertyNode(DbControl, OverviewContext, Node)

Overrides:

loadPropertyChildNodes in class AbstractNodeLoader<Experiment>

loadReverseChildNodes

protected void loadReverseChildNodes(DbControl dc,
 OverviewContext context,
 Node experimentNode)

Loads the root raw bioassay nodes that are part of this experiment

Overrides:

loadReverseChildNodes in class AbstractNodeLoader<Experiment>

See Also:

• RawBioAssayLoader.createReverseNode(DbControl, OverviewContext, Node)