Package net.sf.basedb.util.overview.loader

Class BioSourceLoader

java.lang.Object

net.sf.basedb.util.overview.loader.AbstractNodeLoader<I>

net.sf.basedb.util.overview.loader.BasicItemNodeLoader<BioSource>

net.sf.basedb.util.overview.loader.BioSourceLoader

All Implemented Interfaces:

NodeLoader<BioSource>

public class BioSourceLoader
extends BasicItemNodeLoader<BioSource>

Node loader implementation for biosources. Biosources are an endpoint node with the forward-loading direction going to BioSource:s -> Sample:s.

Version:

2.10

Author:

Nicklas

Last modified

$Date: 2015-02-20 14:13:42 +0100 (fr, 20 feb 2015) $

Field Summary

Fields inherited from class net.sf.basedb.util.overview.loader.BasicItemNodeLoader

ALLOW_ROOT_NODE, allowAsRootNode, DENY_ROOT_NODE, factoryKey, nameGenerator

Constructor Summary

Constructors

Constructor	Description
BioSourceLoader()

Method Summary

Modifier and Type	Method	Description
Node	createForwardNode(DbControl dc, OverviewContext context, Node parentNode)	Create forward-loading biosource nodes from a biomaterial list for the member biosources.
Node	createReverseNode(DbControl dc, OverviewContext context, Node sampleNode)	Create a reverse-loading biosource node from a sample node.
protected void	loadForwardChildNodes(DbControl dc, OverviewContext context, Node bioSourceNode)	Loads the sample nodes that has been created from the given biosource node.
protected void	loadPropertyChildNodes(DbControl dc, OverviewContext context, Node bioSourceNode)	Loads property nodes of an array design.
protected void	loadReverseChildNodes(DbControl dc, OverviewContext context, Node bioSourceNode)	A biosource usually don't have any reverse child nodes.

Methods inherited from class net.sf.basedb.util.overview.loader.BasicItemNodeLoader

createItemNode, createRootNode, getNodeFactory, getNodeFactory, getNodeLoader, getNodeLoaderFactory, getNodeNameGenerator, getNodeValidator, getNodeValidatorFactory, postValidateFolder

Methods inherited from class net.sf.basedb.util.overview.loader.AbstractNodeLoader

createPropertyNode, loadChildNodes, loadChildNodesOfFolderNode, loadChildNodesOfItemNode

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BioSourceLoader

public BioSourceLoader()

Method Details

createForwardNode

public Node createForwardNode(DbControl dc,
 OverviewContext context,
 Node parentNode)

Create forward-loading biosource nodes from a biomaterial list for the member biosources.

Specified by:

createForwardNode in interface NodeLoader<BioSource>

Overrides:

createForwardNode in class AbstractNodeLoader<BioSource>

Parameters:

dc - The DbControl to use for database access

context - The overview context

parentNode - The parent node

Returns:

The folder node for the biosources (or null if used with a list)

createReverseNode

public Node createReverseNode(DbControl dc,
 OverviewContext context,
 Node sampleNode)

Create a reverse-loading biosource node from a sample node.

Specified by:

createReverseNode in interface NodeLoader<BioSource>

Overrides:

createReverseNode in class AbstractNodeLoader<BioSource>

Parameters:

dc - The DbControl to use for database access

context - The overview context

sampleNode - The child node

Returns:

A biosource node, which can be null if validation fails

loadPropertyChildNodes

protected void loadPropertyChildNodes(DbControl dc,
 OverviewContext context,
 Node bioSourceNode)

Loads property nodes of an array design.

• Annotations: AnnotationLoader.createPropertyNode(DbControl, OverviewContext, Node)

Overrides:

loadPropertyChildNodes in class AbstractNodeLoader<BioSource>

loadForwardChildNodes

protected void loadForwardChildNodes(DbControl dc,
 OverviewContext context,
 Node bioSourceNode)

Loads the sample nodes that has been created from the given biosource node.

Overrides:

loadForwardChildNodes in class AbstractNodeLoader<BioSource>

See Also:

• ArrayBatchLoader.createForwardNode(DbControl, OverviewContext, Node)

loadReverseChildNodes

protected void loadReverseChildNodes(DbControl dc,
 OverviewContext context,
 Node bioSourceNode)

A biosource usually don't have any reverse child nodes. The exception is child samples that have a subtype with the ItemSubtype.getPushAnnotations() flag set.

Overrides:

loadReverseChildNodes in class AbstractNodeLoader<BioSource>

Since:

3.1