BASE Core specification

Core specification

User authentication and management

This document covers the details of internal and external user authentication. It also discusses user management and how groups and roles are related.
Status: Stable

Access control

This document covers the details of how to control who may access a given item and/or function in BASE.
Status: Stable

Sessions and application settings

This document covers the details of how client applications should be able to store configuration settings and temporary information in BASE.
Status: Stable

Annotations

This document covers the details of how the annotation system works.
Status: Draft

Biomaterials

This document covers the details of how biomaterials are handled in BASE.
Status: Stable

Protocols and hardware / software

This document covers the details of how BASE handles protocols and information about hardware and software.
Status: Stable

Reporters

This document covers the details of how BASE handles reporters (clones, oligos, etc.).
Status: Stable

Array LIMS

This document covers the details of how the array LIMS section works.
Status: Draft

Hybridizations and raw data

This document covers the details of how BASE handles hybridizations and raw data.
Status: Draft

Experiments and analysis

This document covers the details of how BASE groups data into experiments and performs analysis on it.
Status: In progress

Job controller / queuing system

This document covers the details of how the job controller / queuing system works.
Status: In progress

File upload / disk quota

This document covers the details of how to handle file uploads in BASE. A discussion about disk quota is also included.
Status: Stable

Data import and export

This document covers details for data import and export and how it can be extended to support more file formats by the use of plugins.
Status: In progress

Default data

This document contains a list of all items that are automatically installed into a new BASE 2 installation.
Status: In progress