Default data for a new installations

This document contains a list of all items that are automatically installed into a new BASE 2 installation.

Contents
  1. Users
  2. Groups
  3. Roles
  4. Keys
  5. Quota and quota types
  6. Protocol types
  7. Hardware and hardware types
  8. Software and software types
  9. File types
  10. MIME types
  11. Annotation types
  12. Plate geometries
  13. Plate mappings
  14. Labels
  15. Client applications

Last updated: $Date: 2009-04-06 14:52:39 +0200 (må, 06 apr 2009) $

1. Users

Status: Ok

2. Groups

Status: Ok

3. Roles

Status: Ok

4. Keys

Anonymous item keys:

Role keys

Status: Ok

5. Quota and quota types

Quota types: Status: Ok

Quota

Status: Ok

6. Protocol types

Status: Ok

7. Hardware and hardware types

Hardware types: Status: Ok

Hardware: To be done (JVC)

8. Software and software types

Software types: Status: Ok

Software: To be done (JVC)

9. File types

One type for each item that can be linked with a file. This list may change when the "FileAttachable" interface is developed. Status: Array design to be done, otherwise ok.

10. MIME types

General Mime types
Mime type Description Extension
text/plainText filestxt
text/htmlHypertext markup language fileshtm
text/htmlHypertext markup language fileshtml
image/jpegJPEG imagejpg
image/jpegJPEG imagejpeg
image/jpegJPEG imagejpe
image/gifGIF imagegif
image/pngPNG imagepng
image/tiffTIFF imagetiff
image/tiffTIFF imagetif
image/rgbRGB imagergb
image/x-pictMacintosh PICT formatpict
image/x-ms-bmpMicrosoft Windows bitmapbmp
application/postscriptPostScriptai
application/postscriptPostScripteps
application/postscriptPostScriptps
application/pdfAdobe Acrobat PDFpdf
application/x-latexLaTeX documentlatex
application/mswordMS word documentdoc
application/rtfMicrosoft Rich Text Formatrtf
application/octet-streamPC executableexe
application/x-perlPerl programpl
application/vnd.ms-powerpointPowerPoint (Microsoft)ppt
application/vnd.ms-powerpointPowerPoint (Microsoft)ppz
application/vnd.ms-powerpointPowerPoint (Microsoft)pps
application/vnd.ms-powerpointPowerPoint (Microsoft)pot
application/vnd.ms-excelExcel spreadsheet (Microsoft)xls
application/vnd.ms-excelExcel spreadsheet (Microsoft)xlc
application/vnd.ms-excelExcel spreadsheet (Microsoft)xll
application/vnd.ms-excelExcel spreadsheet (Microsoft)xlm
application/vnd.ms-excelExcel spreadsheet (Microsoft)xlw
application/x-compressUnix compressed filez
application/zipDOS/PC - Pkzipped archivezip
application/x-compressedGzip compressed archivetgz
application/x-gtarGzipped archivegtar
application/x-gzipGzip compressed filegz

Microarray/BASE-specific mime types

Mime type Description Extension
text/plainGenePix Results filegpr
text/plainGenePix Array List filegal
text/plainSpot file formatspot
text/plainSpotfinder file formattav
text/plainAffymetrix CEL filecel
text/plainFASTA formatted filefasta
text/plainBASEfile formatted filebase
text/plainBiorobotics TAM formattam
text/plainMolecularware MWBR formatmvbr

Status: Ok

11. Annotation types

All annotations required for MIAME comatibility should be defined. This requires that it is possible to import MGED ontologies.

Status: To be done

12. Plate geometries

Status: Ok

13. Plate mappings

Status: To be done

14. Labels

Status: Ok

15. Client applications

Status: Ok