net.sf.basedb.core.data
Class TransformationData

java.lang.Object
  net.sf.basedb.core.data.BasicData
      net.sf.basedb.core.data.TransformationData

All Implemented Interfaces:

IdentifiableData, NameableData, RemovableData

public class TransformationData
extends BasicData
implements NameableData, RemovableData

This class holds information about a transformation.

Version:

2.0

Author:

Nicklas

See Also:

Transformation, Developer documentation: Experiments and analysis

Last modified

$Date: 2011-10-21 13:15:41 +0200 (Fri, 21 Oct 2011) $

Hibernate: class

table="`Transformations`" lazy="true"

Field Summary

private String	description
private ExperimentData	experiment
private JobData	job
private String	name
private Set<BioAssaySetData>	products
private Set<RawBioAssayData>	rawSources
private boolean	removed
private BioAssaySetData	source

Fields inherited from interface net.sf.basedb.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

TransformationData()

Method Summary

String	getDescription() Get the description for the item.
ExperimentData	getExperiment() Get the experiment this bioassayset belongs to.
JobData	getJob() Get the job that was used to execute this transformation
String	getName() Get the name of the item.
(package private) Set<BioAssaySetData>	getProducts() This is the inverse end.
Set<RawBioAssayData>	getRawSources() Get the source raw bioassays for the transformation.
BioAssaySetData	getSource() Get the source bioassayset for the transformation.
boolean	isRemoved() Check if the removed flag is set for this item.
void	setDescription(String description) Set the description for the item.
void	setExperiment(ExperimentData experiment)
void	setJob(JobData job)
void	setName(String name) Set the name of the item.
(package private) void	setProducts(Set<BioAssaySetData> products)
(package private) void	setRawSources(Set<RawBioAssayData> rawSources)
void	setRemoved(boolean removed) Set the removed flag for this item.
void	setSource(BioAssaySetData source)

Methods inherited from class net.sf.basedb.core.data.BasicData

equals, getId, getVersion, hashCode, setId, setVersion, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.sf.basedb.core.data.IdentifiableData

getId, getVersion

Field Detail

name

private String name

description

private String description

removed

private boolean removed

experiment

private ExperimentData experiment

source

private BioAssaySetData source

job

private JobData job

rawSources

private Set<RawBioAssayData> rawSources

products

private Set<BioAssaySetData> products

Constructor Detail

TransformationData

public TransformationData()

Method Detail

getName

public String getName()

Description copied from interface: NameableData

Get the name of the item.

Specified by:

getName in interface NameableData

Returns:

A String with the name of the item

setName

public void setName(String name)

Description copied from interface: NameableData

Set the name of the item. The name cannot be null and mustn't be longer than the value specified by the MAX_NAME_LENGTH constant.

Specified by:

setName in interface NameableData

Parameters:

name - The new name for the item

getDescription

public String getDescription()

Description copied from interface: NameableData

Get the description for the item.

Specified by:

getDescription in interface NameableData

Returns:

A String with a description of the item

setDescription

public void setDescription(String description)

Description copied from interface: NameableData

Set the description for the item. The description can be null but mustn't be longer than the value specified by the MAX_DESCRIPTION_LENGTH constant.

Specified by:

setDescription in interface NameableData

Parameters:

description - The new description for the item

isRemoved

public boolean isRemoved()

Description copied from interface: RemovableData

Check if the removed flag is set for this item.

Specified by:

isRemoved in interface RemovableData

Returns:

TRUE if the item is flagged as removed, FALSE otherwise

setRemoved

public void setRemoved(boolean removed)

Description copied from interface: RemovableData

Set the removed flag for this item.

Specified by:

setRemoved in interface RemovableData

Parameters:

removed - TRUE if the item should be flagged as removed, FALSE otherwise

getExperiment

public ExperimentData getExperiment()

Get the experiment this bioassayset belongs to.

Hibernate: many-to-one

column="`experiment_id`" not-null="true" outer-join="false" update="false"

setExperiment

public void setExperiment(ExperimentData experiment)

getSource

public BioAssaySetData getSource()

Get the source bioassayset for the transformation. Null if this is a root transformation from raw bioassays.

Hibernate: many-to-one

column="`bioassayset_id`" not-null="false" outer-join="false" update="false"

setSource

public void setSource(BioAssaySetData source)

getJob

public JobData getJob()

Get the job that was used to execute this transformation

Hibernate: many-to-one

column="`job_id`" not-null="false" outer-join="false" update="false"

setJob

public void setJob(JobData job)

getRawSources

public Set<RawBioAssayData> getRawSources()

Get the source raw bioassays for the transformation.

Hibernate: set

table="`TransformationRawBioAssays`" lazy="true"

Hibernate: collection-key

column="`transformation_id`"

Hibernate: collection-many-to-many

column="`rawbioassay_id`" class="net.sf.basedb.core.data.RawBioAssayData"

setRawSources

void setRawSources(Set<RawBioAssayData> rawSources)

getProducts

Set<BioAssaySetData> getProducts()

This is the inverse end.

See Also:

BioAssaySetData.getTransformation()

Hibernate: set

lazy="true" inverse="true" cascade="delete"

Hibernate: collection-key

column="`transformation_id`"

Hibernate: collection-one-to-many

class="net.sf.basedb.core.data.BioAssaySetData"

setProducts

void setProducts(Set<BioAssaySetData> products)