net.sf.basedb.core.data
Class ReporterData

java.lang.Object
  net.sf.basedb.core.data.BasicData
      net.sf.basedb.core.data.ReporterData

All Implemented Interfaces:

BatchableData, ExtendableData, IdentifiableData, NameableData, RegisteredData

Direct Known Subclasses:

BaseFileImporter.ReporterProxy

public class ReporterData
extends BasicData
implements NameableData, ExtendableData, BatchableData, RegisteredData

This class represents the idea of clone, oligo or some other reporter for a gene. Each reporter must have a unique id, the reporter ID. The only required property, except the reporter ID is the name.

The server administrator may also add columns in the database for other properties of the reporters. The new columns are mapped to BASE in the extended-properties.xml file. For more information about this see the ExtendedProperties class.

Version:

2.0

Author:

Samuel

See Also:

ExtendableData, Reporter, ReporterBatcher, ExtendedProperties, Developer documentation: Reporters

Hibernate: class

table="`Reporters`" lazy="true"

Field Summary

private String	description
private Date	entryDate
private Map<String,Object>	extendedProperties
private String	externalId
private String	lastSource The source of the last update
private Date	lastUpdate The last update date.
static int	MAX_EXTERNAL_ID_LENGTH The maximum length of the external ID that can be stored in the database.
static int	MAX_LAST_SOURCE_LENGTH The maximum length of the last source that can be stored in the database.
static int	MAX_SYMBOL_LENGTH The maximum length of the gene symbol that can be stored in the database.
private String	name
private Set<ReporterListScoreData>	reporterListScores
private ReporterTypeData	reporterType
private String	symbol

Fields inherited from interface net.sf.basedb.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

ReporterData()

ReporterData(int id)
Create a reporter object with a given ID.

Method Summary

String	getDescription() Get the description for the item.
Date	getEntryDate() Get the date this item was added to the database.
Object	getExtended(String name) Get the value of an extended property.
String	getExternalId() Get the external id for this ReporterData item.
String	getLastSource() Get the source that was used when this reporter was last updated.
Date	getLastUpdate() Get the date and time the information about this reporter last was updated.
String	getName() Get the name of the item.
(package private) Set<ReporterListScoreData>	getReporterListScores() The lists this reporter is used in.
(package private) ReporterTypeData	getReporterType() Get the ReporterTypeData of this the reporter.
String	getSymbol() Get the gene symbol of the reporter.
void	setDescription(String description) Set the description for the item.
(package private) void	setEntryDate(Date entryDate)
void	setExtended(String name, Object value) Set the value of an extended property.
void	setExternalId(String externalId)
(package private) void	setLastSource(String source)
(package private) void	setLastUpdate(Date lastUpdate)
void	setName(String name) Set the name of the item.
(package private) void	setReporterListScores(Set<ReporterListScoreData> reporterListScores)
(package private) void	setReporterType(ReporterTypeData reporterType)
void	setSymbol(String symbol)

Methods inherited from class net.sf.basedb.core.data.BasicData

equals, getId, getVersion, hashCode, setId, setVersion, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.sf.basedb.core.data.IdentifiableData

getId, getVersion

Field Detail

entryDate

private Date entryDate

MAX_EXTERNAL_ID_LENGTH

public static final int MAX_EXTERNAL_ID_LENGTH

The maximum length of the external ID that can be stored in the database.

See Also:

setExternalId(String), Constant Field Values

externalId

private String externalId

MAX_SYMBOL_LENGTH

public static final int MAX_SYMBOL_LENGTH

The maximum length of the gene symbol that can be stored in the database.

See Also:

Constant Field Values

symbol

private String symbol

lastUpdate

private Date lastUpdate

The last update date.

MAX_LAST_SOURCE_LENGTH

public static final int MAX_LAST_SOURCE_LENGTH

The maximum length of the last source that can be stored in the database.

See Also:

Constant Field Values

lastSource

private String lastSource

The source of the last update

name

private String name

description

private String description

extendedProperties

private Map<String,Object> extendedProperties

reporterType

private ReporterTypeData reporterType

reporterListScores

private Set<ReporterListScoreData> reporterListScores

Constructor Detail

ReporterData

public ReporterData()

ReporterData

public ReporterData(int id)

Create a reporter object with a given ID.

Parameters:

id - The reporter ID

Since:

2.8

Method Detail

getEntryDate

public Date getEntryDate()

Description copied from interface: RegisteredData

Get the date this item was added to the database. The value is generated at creation time and can't be modified later.

Specified by:

getEntryDate in interface RegisteredData

setEntryDate

void setEntryDate(Date entryDate)

getExternalId

public String getExternalId()

Get the external id for this ReporterData item.

Returns:

The reporter's external ID.

Hibernate: property

column="`external_id`" type="string" length="255" not-null="true" unique="true"

setExternalId

public void setExternalId(String externalId)

getSymbol

public String getSymbol()

Get the gene symbol of the reporter.

Returns:

The gene symbol of the reporter

Hibernate: property

column="`symbol`" type="string" length="255"

setSymbol

public void setSymbol(String symbol)

getLastUpdate

public Date getLastUpdate()

Get the date and time the information about this reporter last was updated.

Returns:

A Date object

Hibernate: property

column="`last_update`" type="timestamp" not-null="true"

setLastUpdate

void setLastUpdate(Date lastUpdate)

getLastSource

public String getLastSource()

Get the source that was used when this reporter was last updated.

Returns:

A String object

Hibernate: property

column="`last_source`" type="string" not-null="false" length="255"

setLastSource

void setLastSource(String source)

getName

public String getName()

Description copied from interface: NameableData

Get the name of the item.

Specified by:

getName in interface NameableData

Returns:

A String with the name of the item

setName

public void setName(String name)

Description copied from interface: NameableData

Set the name of the item. The name cannot be null and mustn't be longer than the value specified by the MAX_NAME_LENGTH constant.

Specified by:

setName in interface NameableData

Parameters:

name - The new name for the item

getDescription

public String getDescription()

Description copied from interface: NameableData

Get the description for the item.

Specified by:

getDescription in interface NameableData

Returns:

A String with a description of the item

setDescription

public void setDescription(String description)

Description copied from interface: NameableData

Set the description for the item. The description can be null but mustn't be longer than the value specified by the MAX_DESCRIPTION_LENGTH constant.

Specified by:

setDescription in interface NameableData

Parameters:

description - The new description for the item

getExtended

public Object getExtended(String name)

Description copied from interface: ExtendableData

Get the value of an extended property.

Specified by:

getExtended in interface ExtendableData

Parameters:

name - The name of the property

Returns:

The value of the property or null if not found

setExtended

public void setExtended(String name,
                        Object value)

Description copied from interface: ExtendableData

Set the value of an extended property.

Specified by:

setExtended in interface ExtendableData

Parameters:

name - The name of the property

value - The new value for the property

getReporterType

ReporterTypeData getReporterType()

Get the ReporterTypeData of this the reporter. Package private since we cannot expose the data object to client applications.

Returns:

The ReporterTypeData item

See Also:

Reporter.getReporterType(net.sf.basedb.core.DbControl, ReporterData)

Hibernate: many-to-one

column="`reportertype_id`" not-null="false" outer-join="false"

setReporterType

void setReporterType(ReporterTypeData reporterType)

getReporterListScores

Set<ReporterListScoreData> getReporterListScores()

The lists this reporter is used in. This is the inverse end.

See Also:

ReporterListData.getReporterListScores()

Hibernate: set

lazy="true" inverse="true"

Hibernate: collection-key

column="`reporter_id`"

Hibernate: collection-one-to-many

class="net.sf.basedb.core.data.ReporterListScoreData"

setReporterListScores

void setReporterListScores(Set<ReporterListScoreData> reporterListScores)