net.sf.basedb.util.overview.validator
Class RawBioAssayValidator

java.lang.Object
  net.sf.basedb.util.overview.validator.BasicNodeValidator<I>
      net.sf.basedb.util.overview.validator.NameableNodeValidator<RawBioAssay>
          net.sf.basedb.util.overview.validator.RawBioAssayValidator

All Implemented Interfaces:

NodeValidator<RawBioAssay>

public class RawBioAssayValidator
extends NameableNodeValidator<RawBioAssay>

Validator implementation for raw bioassays. Validation rules:

• Non-default raw data type: Validator.NONDEFAULT_RAWDATATYPE
• Incorrect array num: Validator.INCORRECT_ARRAY_NUM
• Two raw bioassays from the same scan uses the same array index: Validator.DUPLICATE_ARRAY_NUM
• The number of raw data spots is different from the number of features on the array design: Validator.NONMATCHING_SPOTCOUNT.

Version:

2.10

Author:

Nicklas

Last modified

$Date: 2010-08-13 10:50:27 +0200 (Fri, 13 Aug 2010) $

Constructor Summary

RawBioAssayValidator()

Method Summary

protected Fix	getMissingItemFix(Node parentNode) Subclasses should override this method if they have a suggessted fix for a missing item problem.
void	postValidate(DbControl dc, OverviewContext context, Node node, Node parentNode) Do nothing.

Methods inherited from class net.sf.basedb.util.overview.validator.BasicNodeValidator

getDeniedItemFix, postDeniedItem, postMissingItem, postValidateFolder, preDeniedItem, preMissingItem, preValidate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RawBioAssayValidator

public RawBioAssayValidator()

Method Detail

postValidate

public void postValidate(DbControl dc,
                         OverviewContext context,
                         Node node,
                         Node parentNode)

Description copied from class: BasicNodeValidator

Do nothing. Subclasses should override this method if they need more validation for an existing and accessible item.

Specified by:

postValidate in interface NodeValidator<RawBioAssay>

Overrides:

postValidate in class NameableNodeValidator<RawBioAssay>

Parameters:

dc - A DbControl to use if the validation needs to access the database

context - The current overview context

node - The node object that represents item

parentNode - The parent node that is linked with the item

getMissingItemFix

protected Fix getMissingItemFix(Node parentNode)

Description copied from class: BasicNodeValidator

Subclasses should override this method if they have a suggessted fix for a missing item problem. The default implementation does nothing, but the following template may be usable by most subclasses:

                new Fix("Add item to parent", parentNode.getItem())
                

Specified by:

getMissingItemFix in class BasicNodeValidator<RawBioAssay>

Returns:

Always null