net.sf.basedb.util.overview.validator
Class LabeledExtractValidator

java.lang.Object
  net.sf.basedb.util.overview.validator.BasicNodeValidator<I>
      net.sf.basedb.util.overview.validator.NameableNodeValidator<LabeledExtract>
          net.sf.basedb.util.overview.validator.LabeledExtractValidator

All Implemented Interfaces:

NodeValidator<LabeledExtract>

public class LabeledExtractValidator
extends NameableNodeValidator<LabeledExtract>

Validator implementation for labeled extracts. Validation rules:

• Missing item: Validator.MISSING_LABELED_EXTRACT
• Denied access to label: Validator.DENIED_LABEL
• Different label for pooled child: Validator.DIFFERENT_LABEL
• Labeled extract has incorrect array index on hyb: Validator.INCORRECT_ARRAY_NUM
• Duplicates of same label on hyb: Validator.NONUNIQUE_LABEL
• Number of labeled extracts on hyb != number of channels in experiment Validator.INCORRECT_NUM_LABELEDEXTRACTS

Version:

2.10

Author:

Nicklas

Last modified

$Date: 2010-11-22 09:02:13 +0100 (Mon, 22 Nov 2010) $

Constructor Summary

LabeledExtractValidator()

Method Summary

protected Fix	getMissingItemFix(Node parentNode) The suggested fix is to add a source labeled extracts to the either the hybridization or the pooled labeled extract.
void	postValidate(DbControl dc, OverviewContext context, Node node, Node parentNode) Do nothing.
void	postValidateFolder(DbControl dc, OverviewContext context, Node folderNode, Node parentNode) Do nothing.
private void	validateLabeledExtractOnHyb(DbControl dc, OverviewContext context, Node extractNode, Node hybNode)
private void	validatePooledLabeledExtract(DbControl dc, OverviewContext context, Node node, Node parentNode)

Methods inherited from class net.sf.basedb.util.overview.validator.BasicNodeValidator

getDeniedItemFix, postDeniedItem, postMissingItem, preDeniedItem, preMissingItem, preValidate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LabeledExtractValidator

public LabeledExtractValidator()

Method Detail

postValidate

public void postValidate(DbControl dc,
                         OverviewContext context,
                         Node node,
                         Node parentNode)

Description copied from class: BasicNodeValidator

Do nothing. Subclasses should override this method if they need more validation for an existing and accessible item.

Specified by:

postValidate in interface NodeValidator<LabeledExtract>

Overrides:

postValidate in class NameableNodeValidator<LabeledExtract>

Parameters:

dc - A DbControl to use if the validation needs to access the database

context - The current overview context

node - The node object that represents item

parentNode - The parent node that is linked with the item

postValidateFolder

public void postValidateFolder(DbControl dc,
                               OverviewContext context,
                               Node folderNode,
                               Node parentNode)

Description copied from class: BasicNodeValidator

Do nothing. Subclasses should override this method if they need to validate all items inside a folder-type node.

Specified by:

postValidateFolder in interface NodeValidator<LabeledExtract>

Overrides:

postValidateFolder in class BasicNodeValidator<LabeledExtract>

Parameters:

dc - A DbControl to use for database access

context - The current overview context

folderNode - The folder node, or null if no folder has been created

parentNode - The parent node (never null)

getMissingItemFix

protected Fix getMissingItemFix(Node parentNode)

The suggested fix is to add a source labeled extracts to the either the hybridization or the pooled labeled extract.

Specified by:

getMissingItemFix in class BasicNodeValidator<LabeledExtract>

validateLabeledExtractOnHyb

private void validateLabeledExtractOnHyb(DbControl dc,
                                         OverviewContext context,
                                         Node extractNode,
                                         Node hybNode)

validatePooledLabeledExtract

private void validatePooledLabeledExtract(DbControl dc,
                                          OverviewContext context,
                                          Node node,
                                          Node parentNode)