net.sf.basedb.util
Class IntensityCalculatorUtil.JepIntensityCalculatorImpl

java.lang.Object
  net.sf.basedb.util.IntensityCalculatorUtil.JepIntensityCalculatorImpl

All Implemented Interfaces:

IntensityCalculator

Enclosing class:

IntensityCalculatorUtil

private static class IntensityCalculatorUtil.JepIntensityCalculatorImpl
extends Object
implements IntensityCalculator

An implementation of the IntensityCalculator interface using JEP expressions.

See Also:

Jep

Field Summary

private JEP[]	jeps
private MeanFunction	mean
private RawFunction	raw

Constructor Summary

private

IntensityCalculatorUtil.JepIntensityCalculatorImpl(JEP[] jeps, RawFunction raw, MeanFunction mean)

Method Summary

float[]

calculateIntensities(RawData rawData) Calculate intensities from a raw data spot.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

jeps

private final JEP[] jeps

raw

private final RawFunction raw

mean

private final MeanFunction mean

Constructor Detail

IntensityCalculatorUtil.JepIntensityCalculatorImpl

private IntensityCalculatorUtil.JepIntensityCalculatorImpl(JEP[] jeps,
                                                           RawFunction raw,
                                                           MeanFunction mean)

Method Detail

calculateIntensities

public float[] calculateIntensities(RawData rawData)

Description copied from interface: IntensityCalculator

Calculate intensities from a raw data spot.

Specified by:

calculateIntensities in interface IntensityCalculator

Parameters:

rawData - The raw data object the intensities should be calculated from

Returns:

An array of floats, or null if no intensities could be calculated